Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G5S46_RS10720 Genome accession   NZ_CP048929
Coordinates   2055000..2055143 (-) Length   47 a.a.
NCBI ID   WP_050303184.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050000..2060143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS10700 (G5S46_10535) pilA 2051423..2052676 (+) 1254 WP_047921365.1 signal recognition particle-docking protein FtsY Machinery gene
  G5S46_RS10705 (G5S46_10540) - 2052947..2053657 (-) 711 WP_373274872.1 opacity family porin -
  G5S46_RS12200 (G5S46_10545) - 2054123..2054631 (-) 509 Protein_2085 pilin -
  G5S46_RS10720 (G5S46_10550) pilE 2055000..2055143 (-) 144 WP_050303184.1 hypothetical protein Machinery gene
  G5S46_RS10725 (G5S46_10555) - 2055561..2055964 (-) 404 Protein_2087 pilin -
  G5S46_RS10730 (G5S46_10565) lpxC 2056092..2057015 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G5S46_RS10740 (G5S46_10570) pilE 2057729..2058148 (-) 420 WP_172763054.1 pilin Machinery gene
  G5S46_RS10745 (G5S46_10575) - 2058244..2058669 (-) 426 Protein_2090 pilin -
  G5S46_RS10750 (G5S46_10580) - 2059196..2059549 (-) 354 Protein_2091 pilin -
  G5S46_RS10755 (G5S46_10585) - 2059590..2059805 (-) 216 Protein_2092 pilin -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5006.49 Da        Isoelectric Point: 7.2429

>NTDB_id=371771 G5S46_RS10720 WP_050303184.1 2055000..2055143(-) (pilE) [Neisseria gonorrhoeae strain CT213]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAGCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=371771 G5S46_RS10720 WP_050303184.1 2055000..2055143(-) (pilE) [Neisseria gonorrhoeae strain CT213]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGGTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447