Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FLK61_RS08305 Genome accession   NZ_CP041372
Coordinates   1529594..1531330 (+) Length   578 a.a.
NCBI ID   WP_176009008.1    Uniprot ID   A0A859FDQ3
Organism   Paenalkalicoccus suaedae strain M4U3P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1524594..1536330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK61_RS08285 (FLK61_30055) - 1525560..1526174 (+) 615 WP_176009004.1 hypothetical protein -
  FLK61_RS08290 (FLK61_30060) dxs 1526186..1528075 (+) 1890 WP_176009005.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FLK61_RS08295 (FLK61_30065) - 1528079..1528876 (+) 798 WP_176009006.1 TlyA family RNA methyltransferase -
  FLK61_RS08300 (FLK61_30070) argR 1529079..1529528 (+) 450 WP_176009007.1 transcriptional regulator ArgR -
  FLK61_RS08305 (FLK61_30075) recN 1529594..1531330 (+) 1737 WP_176009008.1 DNA repair protein RecN Machinery gene
  FLK61_RS08310 (FLK61_30080) spoIVB 1531450..1532673 (+) 1224 WP_176009009.1 SpoIVB peptidase -
  FLK61_RS08315 (FLK61_30085) spo0A 1532908..1533699 (+) 792 WP_176009010.1 sporulation transcription factor Spo0A -
  FLK61_RS08320 (FLK61_30090) - 1533735..1533986 (-) 252 WP_176009011.1 DUF2627 domain-containing protein -
  FLK61_RS08325 (FLK61_30095) - 1534395..1536080 (+) 1686 WP_249777727.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65466.76 Da        Isoelectric Point: 4.5697

>NTDB_id=371685 FLK61_RS08305 WP_176009008.1 1529594..1531330(+) (recN) [Paenalkalicoccus suaedae strain M4U3P1]
MLLELSIRNFAIIDEVTISFDEGLTVLTGETGAGKSIIIDAIGQLIGGRGSVEFVRHGSKRAEIEGLFSIQESRSQELSR
LLIDVGVKLDEEETIVLRREMTQQGKSVCRINGKLTTLAILRQVGQQLVDIHGQHEHQQLLQTEKHVMFLDRFAEDDLRE
SKAEYRAVYDKFLKKRQQLTQVSSDEKQMAQRLDLISYQFEEIKKAELVPNEDQELQEEKKRLDNSEGLYQNVHGAYDSL
YGDGKGLEWVMAAMNQMEEAAELDPNLQQVLETITSNYYLLEEATYSLRDYYEAIEFDPDRLNTIEARLSEITQLKRKYG
ETVNAVIEYATSIEEELDTLTNREQRLEQWEKELESIANDLRIEGENLTAIRKRSSVKLQEAISQQLQDLYMKNTNFDVA
IETRMNGELRAEDLLKRNPFTPNGIDEIGFLVATNKGEPLKSLAKVASGGEISRMILALKSILSRHEGVTSLIFDEVDTG
VSGRVAQAIAEKIHGLSIGSQVLCITHLPQVAAMADTHLFISKNEENDRTTTDVRPLTNKEQVEEISRMISGVEITELTR
QHATELLDQARSSKTDQS

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=371685 FLK61_RS08305 WP_176009008.1 1529594..1531330(+) (recN) [Paenalkalicoccus suaedae strain M4U3P1]
TTGCTTTTAGAGCTGTCAATTCGTAATTTTGCCATTATAGATGAAGTGACTATATCATTTGATGAAGGGCTTACAGTTTT
AACTGGAGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCCATAGGGCAACTTATTGGTGGGCGAGGATCTGTAGAAT
TTGTACGGCACGGGAGTAAGAGAGCGGAAATAGAAGGGTTGTTTTCGATCCAAGAATCTAGGTCTCAGGAGTTATCTCGT
TTGCTCATAGATGTTGGGGTTAAATTAGATGAAGAAGAGACAATTGTTTTACGACGTGAAATGACTCAGCAGGGCAAAAG
TGTATGTCGTATAAACGGGAAACTTACAACTCTTGCCATTTTAAGGCAGGTTGGTCAGCAACTTGTCGATATTCATGGTC
AGCATGAACACCAACAGCTTTTGCAAACAGAGAAGCATGTGATGTTTTTGGATCGATTTGCAGAGGACGATCTTCGAGAG
TCGAAGGCAGAGTATCGAGCGGTTTACGATAAATTTTTAAAGAAGCGCCAGCAGCTTACTCAAGTTTCGTCTGACGAAAA
GCAAATGGCTCAAAGATTAGATTTGATCTCTTACCAATTTGAGGAGATTAAAAAGGCTGAGCTTGTCCCAAATGAAGACC
AGGAGCTTCAAGAAGAAAAAAAGCGCCTTGATAATAGCGAAGGTTTATACCAGAATGTACATGGAGCCTATGACTCTTTA
TATGGAGATGGTAAAGGGCTTGAGTGGGTAATGGCTGCTATGAATCAGATGGAAGAAGCGGCTGAGCTAGATCCTAATTT
GCAACAGGTGCTAGAGACAATTACGAGCAATTACTATTTATTGGAAGAAGCTACATATAGCCTGCGTGATTATTACGAGG
CAATTGAATTTGATCCTGATCGCCTGAATACAATCGAAGCGAGACTGTCAGAAATAACGCAACTAAAAAGAAAATACGGG
GAAACCGTTAATGCTGTCATTGAATACGCAACCTCTATAGAAGAAGAATTAGACACGCTCACAAATAGAGAGCAACGACT
AGAGCAGTGGGAGAAGGAGCTTGAATCGATCGCGAATGATCTTCGTATTGAGGGGGAAAACTTAACTGCTATACGTAAGC
GATCTTCTGTGAAGCTTCAGGAAGCTATCTCACAGCAACTGCAAGATTTATATATGAAGAACACAAACTTTGATGTTGCA
ATTGAGACTCGAATGAACGGGGAACTTCGTGCGGAGGATTTATTAAAACGTAATCCCTTTACTCCAAATGGAATCGATGA
GATAGGATTTTTAGTTGCGACAAATAAAGGCGAACCCCTGAAGTCACTTGCAAAAGTAGCATCTGGTGGTGAGATTTCTA
GAATGATCTTAGCATTAAAATCTATTTTAAGCAGACATGAAGGCGTCACATCATTAATATTCGATGAAGTAGATACAGGA
GTAAGTGGACGCGTTGCTCAAGCCATTGCTGAAAAGATACATGGTTTGTCAATTGGCTCTCAAGTGCTGTGTATCACTCA
CCTACCTCAAGTAGCGGCAATGGCTGATACTCATTTGTTCATTTCTAAGAATGAGGAAAATGATCGAACGACAACAGATG
TAAGGCCGCTAACTAATAAAGAACAAGTAGAAGAAATTAGCCGAATGATATCTGGAGTCGAAATTACAGAATTGACAAGA
CAACATGCTACAGAGTTGCTTGATCAAGCAAGATCATCAAAAACAGATCAAAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A859FDQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

99.827

0.522

Multiple sequence alignment