Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FLK61_RS00970 Genome accession   NZ_CP041372
Coordinates   109813..111219 (+) Length   468 a.a.
NCBI ID   WP_176007690.1    Uniprot ID   A0A859F9A7
Organism   Paenalkalicoccus suaedae strain M4U3P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104813..116219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK61_RS00950 (FLK61_22980) - 105117..105584 (+) 468 WP_176007686.1 CtsR family transcriptional regulator -
  FLK61_RS00955 (FLK61_22985) - 105609..106151 (+) 543 WP_176007687.1 UvrB/UvrC motif-containing protein -
  FLK61_RS00960 (FLK61_22990) - 106148..107230 (+) 1083 WP_176007688.1 protein arginine kinase -
  FLK61_RS00965 (FLK61_22995) clpC 107230..109668 (+) 2439 WP_176007689.1 ATP-dependent protease ATP-binding subunit ClpC -
  FLK61_RS00970 (FLK61_23000) radA 109813..111219 (+) 1407 WP_176007690.1 DNA repair protein RadA Machinery gene
  FLK61_RS00975 (FLK61_23005) disA 111194..112276 (+) 1083 WP_176007691.1 DNA integrity scanning diadenylate cyclase DisA -
  FLK61_RS00980 (FLK61_23010) - 112454..113554 (+) 1101 WP_176007692.1 PIN/TRAM domain-containing protein -
  FLK61_RS00985 (FLK61_23015) ispD 113596..114294 (+) 699 WP_176007693.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FLK61_RS00990 (FLK61_23020) ispF 114291..114770 (+) 480 WP_176007694.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 50844.50 Da        Isoelectric Point: 6.6987

>NTDB_id=371675 FLK61_RS00970 WP_176007690.1 109813..111219(+) (radA) [Paenalkalicoccus suaedae strain M4U3P1]
MAKRKTKFICQECGYESTKWMGRCPGCQEWNTLVEEMEATPTSKRRSFVTSGDGVRSKPESITKIERREESRVSTHINEL
NRVLGGGIVPGSLVLVGGDPGIGKSTLLLQVSSTLAKNKGRVLYISGEESVKQTKLRADRLGVAEDELFVLAETDVQLIE
SVIEEVNPTLVVIDSIQTVHMEDVTSAPGSVSQVRECTSAFMRIAKTKGIAIFLVGHVTKQGAIAGPRILEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMKESGLTEVLNPSEIFLEERSAGAAGSAVVASMEGTRTVLVEIQSLISPTSF
GNPRRMATGIDHNRISLLMAVLEKRVGLMMQNHDAYVKVAGGVRLDEPSIDLAIAVAIASSFRDVPTEPSDVIIGEVGLT
GEVRRVSRIEQRVMEAAKLGFTRVILPSKCLDGWTVPDGIQVVGVGTVSEALDIAIGGKTRGKPTFEL

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=371675 FLK61_RS00970 WP_176007690.1 109813..111219(+) (radA) [Paenalkalicoccus suaedae strain M4U3P1]
ATGGCCAAGCGTAAAACAAAGTTTATATGCCAAGAATGTGGCTATGAATCGACGAAATGGATGGGGCGTTGTCCGGGATG
TCAGGAATGGAATACATTAGTCGAAGAAATGGAAGCAACTCCTACGTCTAAAAGACGTAGTTTTGTGACATCAGGTGATG
GAGTAAGATCGAAGCCTGAGTCTATTACAAAGATTGAACGTAGAGAAGAATCTCGAGTAAGTACACATATCAATGAATTG
AATCGCGTCTTAGGCGGAGGAATTGTCCCTGGCTCACTTGTGCTAGTTGGTGGAGACCCTGGTATTGGGAAATCGACACT
TTTGCTACAAGTATCCTCTACGCTAGCTAAGAATAAGGGACGCGTCTTATATATTTCAGGAGAAGAATCAGTCAAGCAAA
CAAAGCTCAGAGCAGATAGACTCGGTGTCGCAGAGGACGAGCTATTTGTTTTAGCTGAGACAGATGTGCAGTTAATTGAG
AGCGTGATTGAAGAAGTGAATCCAACGCTTGTTGTTATTGACTCGATACAAACGGTACATATGGAGGACGTGACGAGCGC
TCCAGGTAGCGTATCTCAGGTCCGTGAATGTACGTCTGCCTTTATGCGTATTGCTAAAACGAAAGGAATCGCTATCTTTT
TAGTTGGGCATGTTACAAAGCAAGGTGCGATTGCTGGACCACGTATTTTAGAGCACATGGTAGATACCGTACTTTACTTT
GAAGGAGAAAGACACCATACGTATCGTATTTTGCGAGCTGTCAAAAATCGATTTGGATCAACGAATGAAATAGGGATTTT
TGAAATGAAAGAGAGCGGTCTTACTGAAGTGTTGAATCCTTCTGAGATTTTCCTCGAGGAAAGGTCGGCCGGAGCAGCCG
GTTCGGCAGTAGTTGCGTCAATGGAAGGTACTCGAACGGTGCTAGTAGAGATCCAGTCTCTTATCTCTCCAACGAGCTTT
GGAAATCCGAGGCGCATGGCGACGGGAATTGATCACAATCGTATCTCGTTGTTAATGGCGGTATTAGAGAAGCGGGTAGG
GCTAATGATGCAAAACCACGACGCTTATGTAAAGGTCGCTGGTGGAGTAAGATTGGATGAACCATCCATTGACTTAGCGA
TTGCTGTGGCAATTGCATCAAGCTTCCGTGACGTGCCCACTGAACCGTCGGATGTCATTATAGGAGAAGTCGGCCTAACA
GGGGAGGTTAGACGAGTTTCTCGAATTGAGCAACGTGTGATGGAAGCGGCAAAGCTTGGATTCACTCGTGTCATTTTACC
TTCTAAATGCTTAGATGGCTGGACGGTGCCAGATGGCATTCAAGTAGTGGGCGTAGGGACAGTAAGCGAGGCACTTGATA
TTGCGATTGGAGGAAAGACTCGTGGAAAACCAACGTTTGAACTATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A859F9A7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.638

98.077

0.722
  radA Streptococcus pneumoniae Rx1

60.177

96.581

0.581
  radA Streptococcus pneumoniae D39

60.177

96.581

0.581
  radA Streptococcus pneumoniae R6

60.177

96.581

0.581
  radA Streptococcus pneumoniae TIGR4

60.177

96.581

0.581
  radA Streptococcus mitis NCTC 12261

60.177

96.581

0.581
  radA Streptococcus mitis SK321

60.177

96.581

0.581

Multiple sequence alignment