Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FMM01_RS15440 Genome accession   NZ_CP041364
Coordinates   3144288..3146084 (-) Length   598 a.a.
NCBI ID   WP_190973498.1    Uniprot ID   -
Organism   Schleiferilactobacillus harbinensis strain NSMJ42     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3139288..3151084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMM01_RS15420 (FMM01_15415) - 3141158..3142099 (-) 942 WP_150393117.1 L-lactate dehydrogenase -
  FMM01_RS15425 (FMM01_15420) - 3142297..3142977 (+) 681 WP_150393118.1 metal ABC transporter ATP-binding protein -
  FMM01_RS15430 (FMM01_15425) - 3142992..3143789 (+) 798 WP_027828120.1 metal ABC transporter permease -
  FMM01_RS15435 (FMM01_15430) - 3143786..3144133 (-) 348 WP_063515714.1 DUF960 family protein -
  FMM01_RS15440 (FMM01_15435) pepF 3144288..3146084 (-) 1797 WP_190973498.1 oligoendopeptidase F Regulator
  FMM01_RS15445 (FMM01_15440) - 3146274..3147323 (+) 1050 WP_027828117.1 LCP family protein -
  FMM01_RS15450 (FMM01_15445) - 3147480..3148928 (+) 1449 WP_150393326.1 amino acid permease -
  FMM01_RS15455 (FMM01_15450) - 3148999..3149379 (+) 381 WP_150393120.1 hypothetical protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67333.04 Da        Isoelectric Point: 5.1465

>NTDB_id=371670 FMM01_RS15440 WP_190973498.1 3144288..3146084(-) (pepF) [Schleiferilactobacillus harbinensis strain NSMJ42]
MTKQPTRDQVPEDLTWDLTKVFATDAEWEKTFAQVKTAAADLTQYVGTLGQSGAALLKGIQAILSVYRTFEKVYVYASMR
SDQDTGNAHYQSYDAQASALAAQVSAATAFMEPEILAIPEAKLEQFFIDTPQLADYRHFIEVITVKRAHVLPADQEALLA
AAEDVFSSSAQTFNVLSNSDLKLPMVKDEDGNDVQLTNGVYSTLLQSPNRDVRKGVFQGLYAAYGQYQHTFASTLAGQIK
ADNYTAQVRHYSSAREAAMARNHIPASVYDTLIEQVNAHLPLLHRYVALRKRLLKLDTVHMYDMYTPITGTPQLSYTFAE
AKQEARRALSVLGEDYLSHVDEIFNNRYIDVVENKGKRSGAYSGGAYDTPPYELLNWQDDLENLYTLVHETGHSVHSWYT
RHNQPYQYGDYPIFVAEIASTTNENILTDYLLKTQKDPAVQAYVLNHYLDGFKGTVFRQTQFAEFEHHIHESQQQGTPLT
ADSMSQFYGDLNARYYGPETAKDPEIALEWSRIPHFYYNYYVYQYSTGFAAASTLAAKITSGADGAVDRYINNFLKSGSS
RYAIDTMQSAGVDMTQADYLENAFRVFADRLNALEKLV

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=371670 FMM01_RS15440 WP_190973498.1 3144288..3146084(-) (pepF) [Schleiferilactobacillus harbinensis strain NSMJ42]
ATCACCAAACAACCCACCCGGGACCAAGTACCTGAGGACTTAACCTGGGATTTGACCAAGGTTTTCGCCACCGATGCAGA
GTGGGAAAAGACCTTTGCCCAAGTGAAAACGGCGGCAGCTGATCTGACGCAGTACGTCGGCACGCTGGGCCAAAGCGGGG
CAGCACTGCTCAAGGGTATCCAGGCCATTCTGAGTGTCTACCGGACTTTTGAAAAAGTCTACGTCTACGCCAGCATGCGC
AGTGATCAGGACACCGGCAATGCCCATTACCAGAGCTACGATGCCCAAGCCTCGGCGCTAGCCGCTCAGGTGTCCGCCGC
AACAGCCTTCATGGAACCGGAGATCCTGGCCATCCCAGAGGCCAAGCTAGAGCAATTCTTCATCGATACCCCCCAGCTGG
CTGATTATCGCCACTTCATTGAAGTGATCACGGTCAAACGGGCCCACGTGCTGCCCGCTGACCAAGAGGCGCTGCTGGCG
GCCGCGGAGGATGTCTTTTCTTCCTCTGCCCAGACTTTCAACGTCCTGAGCAACTCCGATCTGAAGCTGCCCATGGTCAA
AGATGAGGACGGCAATGACGTTCAGTTGACCAACGGCGTCTACAGCACCTTGCTGCAATCACCTAATCGGGACGTGCGCA
AAGGCGTCTTCCAGGGCCTGTATGCCGCGTATGGCCAATATCAGCACACGTTTGCCAGCACGCTGGCCGGCCAGATCAAG
GCCGATAACTATACCGCCCAAGTCCGCCACTACAGCAGCGCCCGGGAAGCAGCCATGGCTCGCAACCATATTCCGGCCAG
TGTGTATGACACCTTAATCGAACAAGTCAACGCCCACCTGCCCCTGCTCCACCGCTATGTGGCACTGCGCAAGCGGCTGC
TGAAGCTCGACACCGTACACATGTATGACATGTATACTCCGATCACCGGCACGCCCCAGCTCAGCTACACCTTTGCTGAG
GCCAAGCAGGAGGCCCGCCGCGCCTTGAGTGTTTTGGGAGAGGACTACTTGAGCCATGTCGACGAGATTTTCAACAATCG
CTACATTGACGTGGTCGAAAATAAGGGCAAGCGCTCTGGAGCCTATTCCGGCGGGGCCTACGACACGCCGCCTTATGAAC
TGCTCAATTGGCAGGACGATCTGGAGAACCTGTACACCCTGGTCCACGAAACTGGCCACAGTGTTCATTCCTGGTATACG
CGGCACAACCAGCCTTATCAGTACGGTGATTATCCAATCTTCGTCGCAGAAATTGCCTCCACTACAAACGAAAACATTCT
GACGGATTACTTATTGAAGACACAAAAGGATCCCGCCGTTCAAGCCTATGTCCTGAACCACTATTTGGACGGCTTCAAGG
GCACCGTCTTCCGCCAGACCCAGTTTGCAGAATTCGAACACCATATCCACGAATCCCAGCAGCAGGGCACGCCGCTGACT
GCCGACAGTATGAGTCAGTTCTACGGCGACCTGAATGCCCGCTACTACGGCCCTGAGACCGCCAAGGATCCCGAAATTGC
CTTGGAGTGGAGCCGAATCCCCCACTTCTACTACAATTACTACGTCTATCAATACTCAACCGGCTTCGCGGCGGCATCCA
CTCTGGCCGCCAAGATCACCAGCGGCGCTGATGGCGCGGTGGATCGCTACATCAACAACTTCTTGAAGAGCGGTTCCTCC
CGCTATGCCATCGACACGATGCAAAGCGCCGGCGTCGATATGACCCAGGCCGACTACCTGGAGAACGCCTTCCGCGTCTT
CGCTGACCGGCTGAATGCTTTGGAGAAATTAGTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.054

98.997

0.535

Multiple sequence alignment