Detailed information NTG0371640

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G4235_RS06215
• Genome accession: NZ_CP048920
• Coordinates: 1294629..1295621 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-101
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1289629..1300621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4235_RS06185 (G4235_06185)	ispD	1289690..1290400 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G4235_RS06190 (G4235_06190)	ispF	1290400..1290879 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G4235_RS06195 (G4235_06195)	truD	1290876..1291925 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
G4235_RS06200 (G4235_06200)	surE	1291906..1292667 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G4235_RS06205 (G4235_06205)	pcm	1292661..1293287 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
G4235_RS06210 (G4235_06210)	nlpD	1293472..1294566 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
G4235_RS06215 (G4235_06215)	rpoS	1294629..1295621 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G4235_RS06220 (G4235_06220)	-	1295799..1296350 (-)	552	WP_001179443.1	flavodoxin family protein	-
G4235_RS06225 (G4235_06225)	-	1296575..1297618 (+)	1044	WP_001161574.1	MBL fold metallo-hydrolase	-
G4235_RS06230 (G4235_06230)	ygbN	1297761..1299125 (-)	1365	WP_000104433.1	GntP family transporter	-
G4235_RS06235 (G4235_06235)	ygbM	1299214..1299990 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=371640 G4235_RS06215 WP_000081550.1 1294629..1295621(+) (rpoS) [Escherichia coli strain SCU-101]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=371640 G4235_RS06215 WP_000081550.1 1294629..1295621(+) (rpoS) [Escherichia coli strain SCU-101]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715