Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ECTR2_RS03705 Genome accession   NC_017343
Coordinates   768995..770077 (+) Length   360 a.a.
NCBI ID   WP_014533043.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ECT-R     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763995..775077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTR2_RS03685 (ECTR2_696) gdpS 764372..765442 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ECTR2_RS03690 (ECTR2_697) - 765760..766815 (+) 1056 WP_000258145.1 glycosyltransferase family 4 protein -
  ECTR2_RS03695 (ECTR2_698) - 766980..767621 (-) 642 WP_000192949.1 YigZ family protein -
  ECTR2_RS03700 (ECTR2_699) fakB1 767765..768631 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  ECTR2_RS03705 (ECTR2_700) comFA 768995..770077 (+) 1083 WP_014533043.1 DEAD/DEAH box helicase Machinery gene
  ECTR2_RS03710 (ECTR2_701) - 770070..770744 (+) 675 WP_001057965.1 ComF family protein -
  ECTR2_RS03715 (ECTR2_702) hpf 770805..771377 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ECTR2_RS03720 (ECTR2_703) secA 771791..774322 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ECTR2_RS03725 - 774364..774468 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42089.53 Da        Isoelectric Point: 9.5934

>NTDB_id=37158 ECTR2_RS03705 WP_014533043.1 768995..770077(+) (comFA) [Staphylococcus aureus subsp. aureus ECT-R]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQEDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=37158 ECTR2_RS03705 WP_014533043.1 768995..770077(+) (comFA) [Staphylococcus aureus subsp. aureus ECT-R]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGAAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364

Multiple sequence alignment