Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CXB71_RS07385 Genome accession   NZ_CP041361
Coordinates   1422123..1422719 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain WRN014     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417123..1427719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB71_RS07355 (CXB71_07355) - 1417337..1417792 (+) 456 WP_014304922.1 flavodoxin -
  CXB71_RS07360 (CXB71_07360) dapD 1417874..1418584 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CXB71_RS07365 (CXB71_07365) - 1418655..1419779 (+) 1125 WP_069448704.1 N-acetyldiaminopimelate deacetylase -
  CXB71_RS07370 (CXB71_07370) - 1419840..1420085 (+) 246 WP_003154596.1 YkuS family protein -
  CXB71_RS07375 (CXB71_07375) - 1420119..1420925 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  CXB71_RS07380 (CXB71_07380) - 1421213..1421671 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  CXB71_RS07385 (CXB71_07385) rok 1422123..1422719 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  CXB71_RS07390 (CXB71_07390) - 1422740..1423732 (-) 993 WP_003154589.1 hypothetical protein -
  CXB71_RS07395 (CXB71_07395) - 1423878..1424480 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  CXB71_RS07400 (CXB71_07400) - 1424532..1425551 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  CXB71_RS07405 (CXB71_07405) glp 1425569..1426861 (+) 1293 WP_063174789.1 gephyrin-like molybdotransferase Glp -
  CXB71_RS07410 (CXB71_07410) mobB 1426822..1427343 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=371574 CXB71_RS07385 WP_003154591.1 1422123..1422719(+) (rok) [Bacillus velezensis strain WRN014]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=371574 CXB71_RS07385 WP_003154591.1 1422123..1422719(+) (rok) [Bacillus velezensis strain WRN014]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATATCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment