Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V49_RS12280 Genome accession   NZ_CP048911
Coordinates   2104405..2104890 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099405..2109890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V49_RS12270 - 2100000..2100505 (-) 506 Protein_2122 pilin -
  G4V49_RS12455 - 2101321..2101439 (-) 119 Protein_2123 pilin -
  G4V49_RS10940 - 2101562..2101882 (-) 321 Protein_2124 pilin -
  G4V49_RS12275 - 2101943..2102326 (-) 384 Protein_2125 pilin -
  G4V49_RS10945 lpxC 2102471..2103394 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G4V49_RS10950 - 2103888..2104270 (-) 383 Protein_2127 pilin -
  G4V49_RS12280 pilE 2104405..2104890 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V49_RS10965 - 2104947..2105331 (-) 385 Protein_2129 pilin -
  G4V49_RS12285 pilE 2105466..2105951 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V49_RS10980 - 2106008..2106355 (-) 348 Protein_2131 pilin -
  G4V49_RS10985 - 2106408..2106801 (-) 394 Protein_2132 pilin -
  G4V49_RS10990 - 2106936..2107378 (-) 443 Protein_2133 pilin -
  G4V49_RS12460 pilE 2107914..2108564 (-) 651 WP_279380562.1 pilin Machinery gene
  G4V49_RS11000 pilE 2108572..2108889 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V49_RS11005 - 2109219..2109410 (+) 192 WP_014580443.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=371534 G4V49_RS12280 WP_125121586.1 2104405..2104890(-) (pilE) [Neisseria gonorrhoeae strain SRRSH204]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=371534 G4V49_RS12280 WP_125121586.1 2104405..2104890(-) (pilE) [Neisseria gonorrhoeae strain SRRSH204]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453