Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IHMA87_RS25945 Genome accession   NZ_CP041354
Coordinates   5391822..5393183 (-) Length   453 a.a.
NCBI ID   WP_033999459.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AZPAE15042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5386822..5398183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHMA87_RS25920 (IHMA87_05063) yjiA 5386986..5387990 (-) 1005 WP_003153054.1 GTPase -
  IHMA87_RS25925 (IHMA87_05064) - 5388050..5388253 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  IHMA87_RS25930 (IHMA87_05065) - 5388302..5390368 (-) 2067 WP_012077342.1 carbon starvation CstA family protein -
  IHMA87_RS25935 (IHMA87_05066) - 5390729..5391235 (-) 507 WP_003153055.1 DUF3015 domain-containing protein -
  IHMA87_RS25940 (IHMA87_05067) mapZ 5391438..5391815 (+) 378 WP_003153057.1 cyclic di-GMP-binding protein MapZ -
  IHMA87_RS25945 (IHMA87_05068) radA 5391822..5393183 (-) 1362 WP_033999459.1 DNA repair protein RadA Machinery gene
  IHMA87_RS25950 (IHMA87_05069) - 5393293..5393727 (+) 435 WP_003153059.1 CopD family protein -
  IHMA87_RS25955 (IHMA87_05070) - 5393784..5394038 (-) 255 WP_012077345.1 YdcH family protein -
  IHMA87_RS25960 (IHMA87_05071) - 5394113..5394679 (-) 567 WP_074197475.1 ankyrin repeat domain-containing protein -
  IHMA87_RS25965 (IHMA87_05072) katB 5394735..5396276 (-) 1542 WP_034081481.1 catalase KatB -
  IHMA87_RS25970 (IHMA87_05073) - 5396464..5398017 (-) 1554 WP_023443024.1 catalase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48422.82 Da        Isoelectric Point: 6.8357

>NTDB_id=371465 IHMA87_RS25945 WP_033999459.1 5391822..5393183(-) (radA) [Pseudomonas aeruginosa strain AZPAE15042]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRVPALYVTGEESQQQVAMRARRLSLPEDRLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=371465 IHMA87_RS25945 WP_033999459.1 5391822..5393183(-) (radA) [Pseudomonas aeruginosa strain AZPAE15042]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTGGTCGAGGCCGCGCCGAGCGGTTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATGCCGCGCTTCACCACCGGCTCGGCCGAGCTGGACCGG
GTGCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATCCTCCT
GCAGACCCTGTGCAACCTGGCGACCCGGGTGCCGGCTTTGTATGTCACCGGCGAGGAGTCGCAACAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGCTGCCGGAAGACCGGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCC
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTGCGCGAAAGCGCCGCCATGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAAGGCGAG
TCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTCAAGGAGGTCAGCAATCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAGGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGATACCAGCCACCTGGCCAACCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGCATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTACTGGAAACCGCCTCCGACCTGGCGCTGATGGCGG
CGGTAATGTCGAGCCTGCGCAACCGGCCGTTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCGGGCGAGGTG
CGCCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGCTTCAAGCGCGCCATCGTGCCCCTCGGCAA
CGCACCGAAGGAAGCCCCGGCGGGCTTGCAGGTGATCGCCGTGACGCGCCTGGAGCAGGCCCTGGACGCCCTCTTCGAAT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466

Multiple sequence alignment