Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   LPA_RS10445 Genome accession   NC_014125
Coordinates   2339277..2339834 (-) Length   185 a.a.
NCBI ID   WP_011946906.1    Uniprot ID   -
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2334277..2344834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS10420 (lpa_02905) - 2334572..2335111 (-) 540 WP_013101628.1 hypothetical protein -
  LPA_RS10425 (lpa_02906) - 2335271..2335921 (-) 651 WP_013101629.1 lysoplasmalogenase -
  LPA_RS10430 (lpa_02907) - 2336001..2336501 (-) 501 WP_011214243.1 hypothetical protein -
  LPA_RS10435 (lpa_02908) - 2336993..2337853 (+) 861 WP_013101630.1 polysaccharide deacetylase family protein -
  LPA_RS10440 (lpa_02910) - 2337971..2339167 (-) 1197 WP_013101631.1 murein transglycosylase A -
  LPA_RS10445 (lpa_02911) lpp1976 2339277..2339834 (-) 558 WP_011946906.1 hypothetical protein Machinery gene
  LPA_RS10450 (lpa_02913) lpp1977 2339831..2340637 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LPA_RS10455 (lpa_02914) lpp1978 2340576..2340890 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LPA_RS10460 (lpa_02915) hisC 2341050..2342159 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LPA_RS10465 (lpa_02916) - 2342196..2342537 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LPA_RS10475 (lpa_02917) secF 2342715..2343632 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21710.17 Da        Isoelectric Point: 7.2966

>NTDB_id=37146 LPA_RS10445 WP_011946906.1 2339277..2339834(-) (lpp1976) [Legionella pneumophila 2300/99 Alcoy]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYVQKDYGANK
IANELVKNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDDEHGEFSIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=37146 LPA_RS10445 WP_011946906.1 2339277..2339834(-) (lpp1976) [Legionella pneumophila 2300/99 Alcoy]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTTTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTCCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTCGCTCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATGTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAAAAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAACGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGATGAGCATGGCGAATTTTCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCGGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila strain ERS1305867

96.216

100

0.962
  lpp1976 Legionella pneumophila str. Paris

96.216

100

0.962

Multiple sequence alignment