Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FHG85_RS00700 Genome accession   NZ_CP041345
Coordinates   172633..174012 (+) Length   459 a.a.
NCBI ID   WP_173072362.1    Uniprot ID   A0A7D3XD71
Organism   Tenuifilum thalassicum strain 38H-str     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167633..179012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHG85_RS00670 (FHG85_00675) - 168471..169280 (+) 810 WP_173072356.1 purine-nucleoside phosphorylase -
  FHG85_RS00675 (FHG85_00680) - 169356..169802 (-) 447 WP_173072357.1 ComF family protein -
  FHG85_RS00680 (FHG85_00685) - 170060..170497 (-) 438 WP_173072358.1 DUF2147 domain-containing protein -
  FHG85_RS00685 (FHG85_00690) - 170547..171293 (-) 747 WP_173072359.1 septal ring lytic transglycosylase RlpA family protein -
  FHG85_RS00690 (FHG85_00695) - 171299..171961 (-) 663 WP_173072360.1 DUF2461 domain-containing protein -
  FHG85_RS00695 (FHG85_00700) - 172153..172632 (+) 480 WP_173072361.1 adenylyltransferase/cytidyltransferase family protein -
  FHG85_RS00700 (FHG85_00705) radA 172633..174012 (+) 1380 WP_173072362.1 DNA repair protein RadA Machinery gene
  FHG85_RS00705 (FHG85_00710) - 174142..175410 (+) 1269 WP_173072363.1 NAD(P)/FAD-dependent oxidoreductase -
  FHG85_RS00710 (FHG85_00715) - 175410..176996 (+) 1587 WP_173072364.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50046.38 Da        Isoelectric Point: 7.3079

>NTDB_id=371384 FHG85_RS00700 WP_173072362.1 172633..174012(+) (radA) [Tenuifilum thalassicum strain 38H-str]
MAKTKSVYICQNCGAESVKWLGRCPSCGEWNTFVEERVTKESKKRPGLVDVSRNATPKPLKEIETSNEKRIDTRIGELNR
ILGGGIVPGSIVLLGGEPGIGKSTLALQLALGMNQHKVLYVSGEESARQVKIRADRINPNNQDCLILNETLLENILTQVE
NVQPQLIVIDSIQTLYTDTIESSPGSVSQIRETAAALLRYAKTSGVPVILIGHITKDGSIAGPKILEHIVDVVLQFEGDQ
NYLYRILRSSKNRFGSTSEIGIFEMQSSGLVEVTNPSEILLSHRDEQLSGIAVAATIDGARPFLIETQALVSTAVYGTPQ
RSTTGFDQRRLNMLLAVLERRAGFRLANKDVFLNIAGGLKVNDPAIDLAILAAILSSTLDVPISGTTCFAAEVGLSGEVR
PVNRLDQRIAEADKLGMSHIFVSRYNTKGLNYTSNSCKVVPVGRIEELIRHLFGRDSIE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=371384 FHG85_RS00700 WP_173072362.1 172633..174012(+) (radA) [Tenuifilum thalassicum strain 38H-str]
GTGGCCAAAACTAAAAGCGTTTACATTTGTCAGAACTGCGGGGCCGAATCGGTTAAGTGGTTAGGGCGTTGCCCATCGTG
TGGGGAGTGGAATACATTTGTTGAGGAGCGTGTAACCAAGGAATCCAAAAAGCGACCCGGACTGGTTGACGTTTCACGGA
ATGCTACACCTAAGCCCCTAAAGGAAATTGAAACAAGCAACGAGAAACGCATTGATACTCGTATTGGTGAGCTTAACCGA
ATTTTAGGAGGAGGCATTGTTCCTGGTTCAATTGTATTGCTTGGCGGCGAACCAGGAATTGGTAAATCGACTCTAGCCCT
GCAGCTGGCACTAGGCATGAATCAGCATAAGGTGCTTTACGTATCTGGCGAGGAGAGTGCACGTCAGGTTAAAATTCGAG
CCGATAGAATAAACCCAAACAATCAGGACTGCCTTATTTTAAACGAAACGCTTCTTGAAAATATACTTACACAGGTTGAG
AATGTTCAGCCCCAACTCATTGTTATTGATTCAATACAAACACTTTATACCGATACCATAGAGTCGTCGCCAGGTAGTGT
TTCCCAAATTCGAGAAACTGCCGCTGCTCTTTTGCGATACGCAAAAACTTCCGGTGTGCCTGTTATCCTAATTGGCCATA
TAACCAAGGATGGTAGCATTGCAGGACCTAAGATTCTAGAACATATAGTTGATGTGGTACTGCAGTTTGAGGGCGATCAG
AATTACCTCTATCGTATTCTCCGGTCTTCAAAGAATCGTTTTGGATCAACCTCCGAGATTGGAATATTTGAGATGCAAAG
CTCTGGCTTGGTTGAGGTAACTAACCCCTCGGAGATTCTCCTATCGCATCGCGACGAGCAGCTTTCTGGTATTGCTGTTG
CAGCAACTATCGATGGGGCAAGGCCTTTCCTTATTGAAACCCAAGCTTTAGTTAGCACTGCTGTTTACGGTACGCCCCAG
CGCTCAACTACAGGTTTCGACCAGCGTAGGTTGAACATGCTTTTGGCCGTTCTTGAGCGTCGTGCTGGATTTAGACTAGC
AAACAAGGATGTGTTCCTTAACATTGCTGGTGGTTTAAAGGTTAACGATCCTGCCATCGACTTAGCCATACTTGCTGCCA
TACTCTCTTCTACCCTTGATGTTCCTATTTCTGGCACAACGTGTTTTGCCGCAGAGGTTGGGCTTTCGGGTGAGGTTCGA
CCTGTTAATAGGCTCGATCAGCGTATTGCCGAGGCCGATAAACTTGGTATGTCTCACATTTTTGTGTCGCGATACAACAC
CAAAGGTCTTAACTATACTTCAAATTCGTGTAAAGTTGTGCCCGTTGGTCGCATTGAAGAACTCATTCGTCATCTTTTTG
GACGTGATTCAATAGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(311-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D3XD71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.782

0.499
  radA Streptococcus mitis NCTC 12261

48.352

99.129

0.479
  radA Streptococcus pneumoniae Rx1

48.132

99.129

0.477
  radA Streptococcus pneumoniae D39

48.132

99.129

0.477
  radA Streptococcus pneumoniae R6

48.132

99.129

0.477
  radA Streptococcus pneumoniae TIGR4

48.132

99.129

0.477
  radA Streptococcus mitis SK321

48.132

99.129

0.477

Multiple sequence alignment