Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   G4V52_RS07490 Genome accession   NZ_CP048905
Coordinates   1441760..1443949 (-) Length   729 a.a.
NCBI ID   WP_103195266.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH205     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436760..1448949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V52_RS07465 - 1437812..1437949 (+) 138 WP_153707873.1 hypothetical protein -
  G4V52_RS07470 - 1438028..1438797 (+) 770 Protein_1459 ABC transporter permease subunit -
  G4V52_RS07475 - 1438824..1439516 (+) 693 WP_003689290.1 ATP-binding cassette domain-containing protein -
  G4V52_RS07480 - 1439708..1440322 (+) 615 WP_003703682.1 CadD family cadmium resistance transporter -
  G4V52_RS07485 - 1440618..1441713 (+) 1096 Protein_1462 NnrS family protein -
  G4V52_RS07490 priA 1441760..1443949 (-) 2190 WP_103195266.1 primosomal protein N' Machinery gene
  G4V52_RS07495 - 1444089..1444871 (+) 783 WP_003701617.1 DsbC family protein -
  G4V52_RS07500 - 1444973..1446907 (-) 1935 WP_071200498.1 MacB family efflux pump subunit -
  G4V52_RS07505 - 1446973..1448151 (-) 1179 WP_103195267.1 MacA family efflux pump subunit -
  G4V52_RS07510 - 1448377..1448766 (+) 390 WP_003705766.1 type IV pilin protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81192.03 Da        Isoelectric Point: 8.0826

>NTDB_id=371368 G4V52_RS07490 WP_103195266.1 1441760..1443949(-) (priA) [Neisseria gonorrhoeae strain SRRSH205]
MIYHRIAVNVPLSDGLLTYSHSEPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDAARILSVQTVFVEEKPLPQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQANAQA
AKLIEDWAEQGWIETTEAAKPVLRPYRGQASHSEFVLNTDQQKASDEIQTALGRFRSFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHASAQLPQVDILNIGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIANDEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSRFGAAPMLMVRLAERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=371368 G4V52_RS07490 WP_103195266.1 1441760..1443949(-) (priA) [Neisseria gonorrhoeae strain SRRSH205]
ATGATCTACCATCGCATCGCTGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCGCATTCCGAGCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTTCGCAATAAAACTGTTGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATGCGGCGCGGATTTTGAGCGTTCAGACGGTCTTTGTGGAAGAAAAGCCGTTGCCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACTGGGCAGGCTGTATTTGCCGCATTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCTCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAACAGGCAAACGCGCAGGCG
GCGAAATTGATTGAGGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAACCTGTTTTAAGGCCGTACCG
CGGGCAGGCTTCGCACTCTGAATTTGTATTAAATACCGACCAGCAGAAGGCTTCCGATGAAATTCAGACGGCATTGGGAC
GCTTCCGGTCGTTTCTGCTGTACGGCATTACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCCAAAGTGTTG
GCGCAGGGGCGACAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTAAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGCGCGCGATGTTGG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCGGTGTTTACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGTCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGTTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATGCTTCCGCGCAACTGCCACAAGTGGACATCCTCAACATAGGTCGTCTGAAACTCGAT
AACGGCTTCTCACCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTTAACCG
GCGCGGCTTCGCGCCTGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTTCAAATGTCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGACACGGTACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCAGATTTGTACCGCCGCATCGCCAACGACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGTGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACACCCTGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGCCGTGTTTGCCGAAAACGAATTGAACGAACGGCAAATGTTCGCCATGCCGCCTTTCGGTTTTCAGACGGCCGTCCGT
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTCTTGCCCGAAAG
CGTCTCCCGGTTCGGTGCCGCCCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGTGCGCAAGTTTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAGAACCGCGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

DEAD/DEAH box helicase (DEAD)

(208-361)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.536

100

0.37

Multiple sequence alignment