Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HMPREF0772_RS12900 Genome accession   NC_017342
Coordinates   2561811..2562782 (-) Length   323 a.a.
NCBI ID   WP_000876311.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus TCH60     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556811..2567782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0772_RS12875 (HMPREF0772_12446) murB 2557395..2558318 (+) 924 WP_000608444.1 UDP-N-acetylmuramate dehydrogenase -
  HMPREF0772_RS12880 (HMPREF0772_12447) - 2558336..2558650 (+) 315 WP_001127269.1 CHY zinc finger protein -
  HMPREF0772_RS12885 (HMPREF0772_12448) - 2558967..2559995 (-) 1029 WP_000754458.1 siderophore ABC transporter substrate-binding protein -
  HMPREF0772_RS12890 (HMPREF0772_12449) - 2560110..2560871 (-) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  HMPREF0772_RS12895 (HMPREF0772_12450) - 2560868..2561824 (-) 957 WP_001245566.1 iron chelate uptake ABC transporter family permease subunit -
  HMPREF0772_RS12900 (HMPREF0772_12451) ceuB 2561811..2562782 (-) 972 WP_000876311.1 ABC transporter permease Machinery gene
  HMPREF0772_RS12910 (HMPREF0772_12452) nrdF 2563159..2564130 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  HMPREF0772_RS12915 (HMPREF0772_12453) nrdE 2564250..2566355 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  HMPREF0772_RS12920 (HMPREF0772_12454) nrdI 2566318..2566716 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=37135 HMPREF0772_RS12900 WP_000876311.1 2561811..2562782(-) (ceuB) [Staphylococcus aureus subsp. aureus TCH60]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=37135 HMPREF0772_RS12900 WP_000876311.1 2561811..2562782(-) (ceuB) [Staphylococcus aureus subsp. aureus TCH60]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATTATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTGTCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGAATCTTAATTGCCCTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGTATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTTGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474

Multiple sequence alignment