Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   LPA_RS07880 Genome accession   NC_014125
Coordinates   1746296..1748020 (+) Length   574 a.a.
NCBI ID   WP_011946523.1    Uniprot ID   -
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1741296..1753020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS07860 (lpa_02212) - 1741649..1744171 (+) 2523 WP_011946521.1 bifunctional diguanylate cyclase/phosphodiesterase -
  LPA_RS07865 (lpa_02213) - 1744173..1744742 (-) 570 WP_011213801.1 hypoxanthine-guanine phosphoribosyltransferase -
  LPA_RS07870 (lpa_02214) - 1744785..1745111 (-) 327 WP_011213802.1 DUF1820 family protein -
  LPA_RS07875 (lpa_02215) - 1745294..1746037 (-) 744 WP_011213803.1 methyltransferase domain-containing protein -
  LPA_RS07880 (lpa_02217) pilB 1746296..1748020 (+) 1725 WP_011946523.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPA_RS07885 (lpa_02218) pilC 1748026..1749246 (+) 1221 WP_011946524.1 type II secretion system F family protein Machinery gene
  LPA_RS07890 (lpa_02219) pilD 1749292..1750155 (+) 864 WP_011946525.1 A24 family peptidase Machinery gene
  LPA_RS07895 (lpa_02220) - 1750169..1751374 (-) 1206 WP_013101470.1 cyclic nucleotide-binding domain-containing protein -
  LPA_RS07900 (lpa_02222) - 1751482..1752075 (-) 594 WP_011946528.1 hypothetical protein -
  LPA_RS07905 - 1752091..1752546 (-) 456 WP_011946529.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 62722.31 Da        Isoelectric Point: 5.5861

>NTDB_id=37134 LPA_RS07880 WP_011946523.1 1746296..1748020(+) (pilB) [Legionella pneumophila 2300/99 Alcoy]
MALATEEYRLQGIGQLLVLEKLLDKTKAIELHKLAAAEKISLLQYIVKNKILSAEQIALTAAQNFGVPMLDINCIDVGTI
PVNLVNEKLIKRHAMVPLFSRGTNLYLATDDPSKQASLKEIQFHTGLNTHAIVVETDKLSALIDNLLTAKESQGLSEYVE
DSGDLEGLEISADDEDQDIDTATSVTDDAPIVKFVNKILLDAIRQGASDIHFEPYEREYRIRYRQDGILHEVATPPASLS
SRITARIKVMSNLDISERRIPQDGGFKMKISKSRAIDFRVSTCPTSAGEKVVMRVLDSGAAKLGIEALGFNPVQRTNFLK
AIQRPQGMILVTGPTGSGKTVTLYTALNILNTIEVNISTAEDPVEIKVPGINQVNINPKAGLTFSGALRSFLRQDPDIIM
VGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLNRLVNMGIPTFNIASSVTLIIAQRLARKLCNQCKAVRDDFTNQG
LIELGFKEADLVNLKLYKAVGCEQCTSGYRGRVGLFEVLPMTKELGQLIMSGGNSLDILKLAQSEGMLTIFQSGIEKVKE
GITTIEEVNRVTVD

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=37134 LPA_RS07880 WP_011946523.1 1746296..1748020(+) (pilB) [Legionella pneumophila 2300/99 Alcoy]
ATGGCTCTAGCTACAGAAGAATATAGATTACAGGGAATCGGCCAGCTTCTCGTGCTGGAAAAGCTGCTAGACAAAACAAA
AGCAATTGAACTACACAAGTTGGCAGCAGCAGAAAAGATATCTTTGCTGCAATACATTGTAAAAAATAAAATATTATCTG
CTGAACAAATTGCACTGACGGCTGCTCAAAATTTTGGCGTACCCATGTTGGATATTAATTGCATTGATGTGGGCACCATT
CCTGTCAATCTGGTTAATGAGAAATTAATTAAACGTCATGCCATGGTTCCTCTTTTTAGTCGCGGCACCAATTTATATCT
CGCAACAGATGATCCTAGTAAACAGGCTTCATTAAAGGAAATTCAATTTCATACCGGATTAAATACTCATGCGATAGTTG
TAGAAACAGATAAACTTAGTGCTCTGATTGATAACCTGTTAACAGCAAAGGAAAGTCAGGGCTTATCAGAGTATGTTGAA
GACTCTGGAGATCTAGAAGGTTTGGAAATAAGTGCTGATGATGAAGATCAAGATATTGATACTGCAACATCAGTAACTGA
TGATGCACCTATCGTAAAATTCGTCAATAAAATTTTATTGGATGCGATAAGGCAAGGAGCTTCTGATATACACTTTGAGC
CTTATGAACGAGAATATCGAATCAGGTACAGGCAAGATGGTATTTTACATGAGGTCGCTACCCCTCCCGCAAGCTTGTCA
TCTCGTATTACAGCACGTATCAAGGTAATGTCTAATTTGGATATATCAGAACGGCGTATCCCCCAAGATGGTGGCTTCAA
AATGAAAATTTCCAAGTCACGAGCAATTGATTTCAGAGTGAGCACATGTCCAACCTCGGCTGGGGAAAAAGTGGTTATGC
GGGTTCTTGATTCTGGTGCTGCTAAATTAGGTATTGAAGCATTAGGATTTAATCCTGTTCAGCGAACAAATTTCCTGAAA
GCAATCCAGCGCCCACAAGGGATGATTTTAGTCACTGGCCCTACTGGTAGTGGTAAAACAGTCACTTTATATACGGCTTT
AAATATATTAAATACAATTGAGGTTAATATTTCAACAGCTGAAGATCCAGTTGAAATCAAAGTGCCTGGTATCAATCAGG
TTAATATTAATCCTAAAGCTGGCCTAACCTTTTCCGGTGCATTGCGTTCGTTTCTAAGGCAAGATCCTGATATTATCATG
GTTGGTGAGATACGAGACCTTGAAACAGCAGAGATTGCTATAAAAGCTGCTCAGACAGGGCATTTGGTTCTTTCTACTCT
GCACACAAACAGTGCCGCTGAAACTTTAAATCGTTTAGTAAATATGGGAATACCTACTTTTAACATCGCGAGTTCGGTTA
CCTTAATTATTGCGCAAAGGCTGGCAAGAAAATTATGCAATCAATGTAAGGCAGTGCGTGATGACTTTACCAATCAAGGC
TTGATTGAACTAGGTTTCAAGGAAGCTGATTTGGTTAATCTTAAATTATACAAAGCAGTTGGTTGTGAGCAATGTACAAG
TGGTTATCGCGGGCGAGTTGGGTTGTTTGAGGTTTTACCGATGACAAAAGAGCTTGGCCAATTGATTATGTCAGGTGGTA
ATTCGTTGGATATATTAAAGTTAGCTCAATCAGAAGGTATGCTGACTATCTTTCAATCGGGTATAGAAAAAGTTAAGGAA
GGAATCACGACCATAGAGGAGGTCAATCGGGTAACCGTTGATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(47-151)

Type II/IV secretion system protein (T2SSE)

(197-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Legionella pneumophila strain ERS1305867

100

100

1
  pilB Acinetobacter baylyi ADP1

49.828

100

0.505
  pilB Acinetobacter baumannii D1279779

50.794

98.78

0.502
  pilB Vibrio cholerae strain A1552

50.741

94.077

0.477
  pilF Neisseria gonorrhoeae MS11

47.173

98.606

0.465
  pilB Vibrio campbellii strain DS40M4

47.756

97.038

0.463
  pilB Vibrio parahaemolyticus RIMD 2210633

48.98

93.902

0.46
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.509

92.16

0.364
  pilF Thermus thermophilus HB27

38.848

93.728

0.364

Multiple sequence alignment