Detailed information NTG0037134

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: HMPREF0772_RS12815
• Genome accession: NC_017342
• Coordinates: 2545129..2546211 (-)
• Length: 360 a.a.
• NCBI ID: WP_000370984.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus TCH60
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2540129..2551211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0772_RS12795	-	2540744..2540842 (-)	99	WP_031879007.1	hypothetical protein	-
HMPREF0772_RS12800 (HMPREF0772_12429)	secA	2540884..2543415 (-)	2532	WP_000506536.1	preprotein translocase subunit SecA	-
HMPREF0772_RS12805 (HMPREF0772_12430)	hpf	2543829..2544401 (-)	573	WP_000617735.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
HMPREF0772_RS12810 (HMPREF0772_12431)	-	2544462..2545136 (-)	675	WP_001057973.1	ComF family protein	-
HMPREF0772_RS12815 (HMPREF0772_12432)	comFA	2545129..2546211 (-)	1083	WP_000370984.1	DEAD/DEAH box helicase	Machinery gene
HMPREF0772_RS12820 (HMPREF0772_12433)	fakB1	2546575..2547441 (-)	867	WP_000686342.1	fatty acid kinase binding subunit FakB1	-
HMPREF0772_RS12825 (HMPREF0772_12435)	-	2547585..2548225 (+)	641	Protein_2442	YigZ family protein	-
HMPREF0772_RS12830 (HMPREF0772_12436)	-	2548389..2549444 (-)	1056	WP_000258151.1	glycosyltransferase family 4 protein	-
HMPREF0772_RS12835 (HMPREF0772_12437)	-	2549762..2550832 (+)	1071	WP_000460983.1	GGDEF domain-containing protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42016.52 Da
• Isoelectric Point: 9.6568

>NTDB_id=37134 HMPREF0772_RS12815 WP_000370984.1 2545129..2546211(-) (comFA) [Staphylococcus aureus subsp. aureus TCH60]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=37134 HMPREF0772_RS12815 WP_000370984.1 2545129..2546211(-) (comFA) [Staphylococcus aureus subsp. aureus TCH60]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
ATCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGACGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCTCGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAACAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATACGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Type III restriction enzyme, res subunit (ResIII) (25-173)

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	39.233	94.167	0.369