Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FLM21_RS19660 Genome accession   NZ_CP041335
Coordinates   4119986..4121380 (+) Length   464 a.a.
NCBI ID   WP_148717202.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4114986..4126380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS19635 - 4116670..4117656 (+) 987 WP_148717197.1 KpsF/GutQ family sugar-phosphate isomerase -
  FLM21_RS19640 kdsC 4117659..4118186 (+) 528 WP_373281833.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FLM21_RS19645 lptC 4118186..4118761 (+) 576 WP_148717199.1 LPS export ABC transporter periplasmic protein LptC -
  FLM21_RS19650 lptA 4118742..4119254 (+) 513 WP_148717200.1 lipopolysaccharide transport periplasmic protein LptA -
  FLM21_RS19655 lptB 4119251..4119979 (+) 729 WP_148717201.1 LPS export ABC transporter ATP-binding protein -
  FLM21_RS19660 rpoN/rpoN1 4119986..4121380 (+) 1395 WP_148717202.1 RNA polymerase factor sigma-54 Machinery gene
  FLM21_RS19665 hpf 4121440..4121766 (+) 327 WP_148717203.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FLM21_RS19670 ptsN 4121926..4122390 (+) 465 WP_148717204.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FLM21_RS19675 hprK 4122396..4123340 (+) 945 WP_148717205.1 HPr(Ser) kinase/phosphatase -
  FLM21_RS19680 rapZ 4123360..4124226 (+) 867 WP_148717206.1 RNase adapter RapZ -
  FLM21_RS19685 - 4124274..4124582 (+) 309 WP_246120764.1 NusG domain II-containing protein -
  FLM21_RS19690 - 4124563..4125072 (+) 510 WP_148717208.1 Gx transporter family protein -
  FLM21_RS19695 - 4125069..4125671 (+) 603 WP_148717209.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51701.76 Da        Isoelectric Point: 4.8090

>NTDB_id=371319 FLM21_RS19660 WP_148717202.1 4119986..4121380(+) (rpoN/rpoN1) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MKQSLQLKLSQQLNLTPQLQQSIKLLQLSTLDFRQEIERYLIENPLLEPGEDRGEGSEAGEGEVGDHPLESSNDFGDDDW
SWGSGGGGSGDDDEDFDPASNTARELTLREHLLEQAGLLPLTALDRAVLALLIDALDDDGFLTQSLDEIFAQLPEELVAE
TGLELDDLAVALARLKQLEPVGVGAKDMGEALALQLKTLPVSEPNQLALALVERHLDLLAARDYTRIKKALKCDDAQLKA
ANELIVGLNPRPAARWAQLTPRYVIPDVIVYKARGRWRVRLNEAARPKFRVNQMYANILQRSEGGVMARELQEARWLVKS
VQQRFDTILRVSEAIVARQHAFFEHGEVAMRPMVLRDIAEELDLHESTISRVTSQKYMHSPRGLFEFKYFFGSHVETEAG
GECSATAIKALLKQLIQNEDKTKPLSDSALAEALSQQGIVVARRTVAKYREAMQIAPVNQRKSL

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=371319 FLM21_RS19660 WP_148717202.1 4119986..4121380(+) (rpoN/rpoN1) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGAAGCAATCGCTCCAACTGAAGCTATCGCAGCAGCTCAATCTCACCCCCCAGCTGCAGCAGTCGATCAAGCTGCTGCA
ACTCTCCACCCTCGATTTCCGCCAGGAGATCGAGCGCTACCTGATCGAGAACCCGCTGCTCGAACCCGGCGAGGATCGCG
GCGAAGGCAGCGAGGCCGGCGAGGGCGAGGTTGGCGACCATCCGCTCGAGAGCAGCAACGACTTCGGCGACGACGACTGG
AGCTGGGGTAGCGGCGGAGGCGGCAGCGGGGACGACGACGAGGATTTCGATCCGGCCAGCAACACCGCCCGCGAGCTCAC
GCTGCGCGAACACCTGTTGGAACAGGCCGGGCTGCTGCCGCTGACCGCGCTCGACCGGGCCGTGCTGGCGCTGCTGATCG
ACGCGCTCGACGACGATGGCTTCCTCACCCAGAGCCTCGACGAGATCTTTGCGCAACTGCCTGAGGAACTCGTCGCCGAA
ACCGGGCTCGAACTGGATGACCTCGCAGTGGCGCTGGCCCGGCTCAAGCAGCTTGAGCCAGTCGGTGTCGGCGCGAAAGA
TATGGGTGAGGCGCTGGCATTGCAACTGAAGACACTACCCGTTTCTGAGCCAAATCAACTTGCCCTCGCACTCGTTGAGC
GGCATCTCGATTTATTGGCGGCCCGTGACTACACTAGGATCAAGAAGGCGCTGAAATGCGACGACGCGCAGCTCAAGGCC
GCCAATGAGCTGATCGTGGGATTGAATCCCCGACCAGCCGCACGGTGGGCGCAGTTGACCCCGCGTTACGTGATTCCGGA
TGTCATCGTCTACAAGGCGCGCGGCCGCTGGCGGGTGCGACTGAACGAAGCGGCAAGGCCGAAGTTCAGGGTGAACCAGA
TGTACGCCAACATCCTGCAGCGCAGCGAGGGCGGGGTGATGGCGCGGGAATTGCAAGAGGCGCGCTGGCTGGTGAAAAGT
GTGCAACAACGTTTCGACACCATCCTGCGGGTATCCGAGGCCATCGTCGCCCGGCAGCATGCCTTCTTCGAACACGGCGA
AGTCGCCATGCGGCCGATGGTGCTGCGCGATATCGCTGAAGAGCTCGACCTGCACGAATCCACGATTTCGCGCGTCACGA
GCCAGAAATACATGCACAGTCCAAGGGGGCTCTTCGAGTTCAAATACTTCTTCGGCAGCCACGTCGAAACCGAGGCCGGT
GGTGAATGCTCGGCGACGGCGATCAAGGCCCTGCTCAAACAGCTGATCCAGAACGAGGACAAGACCAAACCACTCTCAGA
CAGTGCGCTTGCCGAGGCGCTGTCGCAGCAAGGGATCGTGGTTGCGCGGCGAACCGTTGCGAAGTACCGGGAAGCGATGC
AGATCGCCCCCGTCAATCAGCGCAAAAGCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(307-462)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(100-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.397

100

0.547

Multiple sequence alignment