Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FLM21_RS14920 Genome accession   NZ_CP041335
Coordinates   3145862..3147211 (-) Length   449 a.a.
NCBI ID   WP_148716330.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3140862..3152211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS14895 - 3141599..3141763 (+) 165 WP_148716325.1 DUF3149 domain-containing protein -
  FLM21_RS14900 - 3141809..3143434 (-) 1626 WP_148716326.1 glycosyltransferase family 39 protein -
  FLM21_RS14905 - 3143548..3143811 (-) 264 WP_148716327.1 type B 50S ribosomal protein L31 -
  FLM21_RS14910 rho 3143919..3145169 (-) 1251 WP_148716328.1 transcription termination factor Rho -
  FLM21_RS14915 trxA 3145354..3145683 (-) 330 WP_373281768.1 thioredoxin TrxA -
  FLM21_RS14920 radA 3145862..3147211 (-) 1350 WP_148716330.1 DNA repair protein RadA Machinery gene
  FLM21_RS14925 flgL 3147308..3148693 (-) 1386 WP_148716331.1 flagellar hook-associated protein FlgL -
  FLM21_RS14930 flgK 3148713..3150902 (-) 2190 WP_148716332.1 flagellar hook-associated protein FlgK -
  FLM21_RS14935 flgJ 3150930..3151847 (-) 918 WP_148716333.1 flagellar assembly peptidoglycan hydrolase FlgJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47606.91 Da        Isoelectric Point: 7.0050

>NTDB_id=371316 FLM21_RS14920 WP_148716330.1 3145862..3147211(-) (radA) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MSKAKSLYSCSACGATSPKWQGQCPGCGEWNTLVEGVAESRASRFEALAADGAVRQLHEVETAELPRTATGMAELDRVLG
GGLVPGGVVLIGGDPGIGKSTLLLQALTRLAQAHKVLYVSGEESPQQIALRAKRLQLESAPVALMAEIGLEKILASLAKE
TPQVAVIDSIQTLYTETLTSAPGSVAQVRECAAQLTRFAKRTGTTILLVGHVTKEGALAGPRVLEHIVDAVLYFEGDTHS
SFRLIRAIKNRFGAVNELGVFAMTDRGLREVSNPSALFLSQHAEPVAGSCVLVTQEGSRPMLVEVQALVDDAHSPQPKRL
TVGLEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRINEPAADLAVLLAIVSSLKDRPLPEKLVVFGEVGLAGEVRPV
QRGQERLKEAAKLGFTHAIVPKANRPRQAIEGMTITAVERLADAVDAAL

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=371316 FLM21_RS14920 WP_148716330.1 3145862..3147211(-) (radA) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGAGCAAAGCCAAATCCCTCTACAGTTGTTCTGCCTGCGGTGCCACCTCGCCCAAGTGGCAGGGGCAGTGCCCCGGTTG
CGGTGAATGGAATACCCTGGTCGAGGGCGTGGCCGAGTCGCGGGCCAGCCGTTTCGAGGCGCTGGCTGCCGACGGTGCAG
TCCGTCAGCTGCACGAGGTCGAGACGGCCGAATTGCCGCGTACCGCCACTGGCATGGCCGAGCTCGATCGCGTGCTCGGC
GGTGGCCTGGTGCCGGGGGGCGTGGTGCTGATCGGCGGCGACCCGGGAATCGGCAAATCCACCTTGCTGCTGCAGGCGCT
CACGCGCCTCGCGCAAGCGCACAAGGTGCTTTATGTCTCGGGCGAGGAATCCCCGCAGCAGATCGCCCTGCGCGCCAAGC
GCTTGCAGCTGGAGTCGGCACCGGTGGCGCTGATGGCTGAGATCGGACTGGAAAAGATTCTCGCCAGCCTTGCCAAGGAA
ACGCCGCAGGTGGCGGTGATCGATTCGATCCAGACGCTGTATACCGAAACGCTGACCAGTGCCCCTGGCAGCGTGGCGCA
GGTACGCGAATGCGCAGCCCAGCTGACCCGCTTTGCCAAGCGCACCGGCACCACCATCCTGCTGGTCGGCCATGTGACCA
AGGAAGGGGCGCTGGCTGGGCCGCGGGTGCTCGAGCATATCGTCGACGCGGTGCTGTATTTCGAAGGCGACACGCATTCG
AGCTTCCGCCTGATCCGCGCGATCAAGAACCGCTTCGGCGCGGTGAACGAGCTTGGCGTGTTTGCCATGACCGATCGCGG
CCTGCGCGAGGTATCAAATCCGTCCGCGCTGTTCCTGAGTCAGCATGCCGAACCGGTTGCCGGCTCCTGTGTGCTGGTGA
CGCAGGAAGGCTCACGGCCGATGTTGGTCGAGGTGCAGGCGCTGGTCGACGATGCCCATTCGCCGCAGCCCAAGCGGTTG
ACGGTGGGGCTGGAGCAGAACCGCCTCGCGCTGTTGCTGGCGGTGCTGCATCGCCATGCCGGCATCGCGGCCTTCGATCA
GGACGTGTTCATCAACGCGGTGGGCGGCGTGCGGATCAACGAGCCGGCGGCAGACCTTGCCGTGCTGCTCGCCATCGTGT
CGTCGCTGAAGGATCGACCCTTGCCGGAGAAGCTGGTGGTCTTCGGCGAAGTGGGTCTGGCTGGCGAGGTGCGACCAGTG
CAGCGCGGCCAGGAACGACTGAAGGAGGCAGCCAAGCTCGGCTTCACCCACGCCATCGTGCCCAAGGCAAACCGACCACG
GCAGGCAATCGAAGGCATGACGATCACGGCGGTGGAACGGTTGGCCGACGCGGTGGATGCTGCGTTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.609

100

0.488
  radA Streptococcus mitis SK321

47.903

100

0.483
  radA Streptococcus mitis NCTC 12261

47.682

100

0.481
  radA Streptococcus pneumoniae Rx1

50

94.432

0.472
  radA Streptococcus pneumoniae D39

50

94.432

0.472
  radA Streptococcus pneumoniae R6

50

94.432

0.472
  radA Streptococcus pneumoniae TIGR4

50

94.432

0.472

Multiple sequence alignment