Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FLM21_RS03540 Genome accession   NZ_CP041335
Coordinates   746451..747581 (-) Length   376 a.a.
NCBI ID   WP_373281801.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741451..752581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS03530 - 744010..744747 (-) 738 WP_148714245.1 dienelactone hydrolase family protein -
  FLM21_RS03535 - 744887..746419 (+) 1533 WP_148714246.1 methyl-accepting chemotaxis protein -
  FLM21_RS03540 pilA 746451..747581 (-) 1131 WP_373281801.1 signal recognition particle-docking protein FtsY Machinery gene
  FLM21_RS03545 - 747580..748989 (+) 1410 WP_187360067.1 pitrilysin family protein -
  FLM21_RS03550 - 748979..750364 (+) 1386 WP_148714249.1 pitrilysin family protein -
  FLM21_RS03555 rsmD 750361..750909 (+) 549 WP_148714250.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FLM21_RS03560 - 751013..751261 (+) 249 WP_148714251.1 YfhL family 4Fe-4S dicluster ferredoxin -
  FLM21_RS03565 - 751275..752333 (+) 1059 WP_148714252.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39993.07 Da        Isoelectric Point: 7.3859

>NTDB_id=371297 FLM21_RS03540 WP_373281801.1 746451..747581(-) (pilA) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MGIPGGRVRQQKFRILAICQPAPLFCAHLPRANMFSFFKSKTPAPASEAVEPAAASAETLVQPEPVPAEPQEKPKLSWSE
RLKAGLAKTRNALGKNLAGLFGGGQIDEDLYEELETVLITADMGVDATTHLLKDVRNRVSLKGLKDGTELKGALKESLTE
LISPLEVPLDISGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLVVWGQRNGVQVIAQDSG
DAAAVAFDAVNAAKARGIDVIIVDTAGRLPTQLHLMEEIKKVKRVVQKADETGPHEVLLVLDANNGQNALNQVKTFDDAL
GLTGLVLTKLDGTAKGGVIAAIAKQRPVPVRFIGVGEGIDDLRPFTANDYVDALFD

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=371297 FLM21_RS03540 WP_373281801.1 746451..747581(-) (pilA) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGGGTATTCCGGGTGGGCGGGTTCGACAACAAAAGTTTAGAATTCTAGCAATTTGCCAGCCTGCGCCGCTGTTTTGCGC
GCACTTACCCCGAGCGAACATGTTCAGCTTCTTCAAATCCAAGACTCCCGCCCCCGCCTCGGAAGCGGTCGAACCCGCGG
CGGCATCCGCCGAAACGCTGGTCCAGCCGGAACCTGTCCCTGCCGAGCCGCAGGAAAAACCCAAGCTATCGTGGTCGGAG
CGGCTCAAGGCGGGCCTTGCCAAGACGCGCAATGCGCTCGGCAAGAACCTGGCCGGGCTGTTCGGTGGCGGCCAGATCGA
CGAGGACCTTTACGAGGAACTCGAAACGGTGCTGATCACCGCTGACATGGGCGTCGATGCTACGACGCATCTGCTGAAGG
ACGTGCGCAACCGCGTCTCGCTCAAGGGCCTGAAGGACGGCACCGAGCTCAAGGGTGCACTCAAGGAATCGCTGACCGAG
CTGATCTCGCCCCTGGAAGTACCGCTCGACATCAGCGGGCACAAGCCCTTCATCCTGATGGTGGCCGGCGTGAACGGAGC
CGGCAAGACCACCAGCATCGGCAAACTCGCCAAGTATTTTCAGAGCCAGGGCAAGTCGGTGCTACTGGCCGCCGGGGACA
CCTTCCGCGCCGCCGCGCGCGAACAGCTGGTAGTGTGGGGGCAGCGCAACGGCGTGCAGGTGATCGCACAGGATTCGGGC
GATGCCGCCGCCGTAGCGTTCGATGCAGTGAATGCAGCCAAGGCACGCGGCATCGATGTGATCATCGTCGATACCGCCGG
CCGGTTGCCGACCCAGCTGCACCTGATGGAAGAAATCAAGAAGGTGAAGCGCGTGGTGCAGAAGGCCGACGAAACCGGCC
CGCACGAGGTACTGCTGGTGCTCGACGCCAATAACGGCCAGAACGCGCTCAACCAGGTGAAGACCTTCGACGATGCGCTG
GGGTTGACCGGCCTCGTACTGACCAAGCTCGACGGTACCGCCAAGGGCGGCGTGATTGCCGCCATCGCCAAGCAACGGCC
GGTGCCGGTGCGCTTCATCGGCGTCGGCGAAGGCATCGACGATCTGCGCCCCTTCACCGCCAACGACTACGTCGACGCGC
TGTTCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(94-158)

SRP54-type protein, GTPase domain (SRP54)

(177-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

68.406

91.755

0.628

Multiple sequence alignment