Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V50_RS12285 Genome accession   NZ_CP048899
Coordinates   2105456..2105941 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100456..2110941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V50_RS12445 - 2101311..2101429 (-) 119 Protein_2121 pilin -
  G4V50_RS10950 - 2101552..2101872 (-) 321 Protein_2122 pilin -
  G4V50_RS12275 - 2101933..2102316 (-) 384 Protein_2123 pilin -
  G4V50_RS10955 lpxC 2102461..2103384 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G4V50_RS10960 - 2103878..2104260 (-) 383 Protein_2125 pilin -
  G4V50_RS12280 pilE 2104395..2104880 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V50_RS10975 - 2104937..2105321 (-) 385 Protein_2127 pilin -
  G4V50_RS12285 pilE 2105456..2105941 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V50_RS10990 - 2105998..2106345 (-) 348 Protein_2129 pilin -
  G4V50_RS10995 - 2106398..2106791 (-) 394 Protein_2130 pilin -
  G4V50_RS11000 - 2106926..2107368 (-) 443 Protein_2131 pilin -
  G4V50_RS12450 pilE 2107894..2108538 (-) 645 WP_269471826.1 pilin Machinery gene
  G4V50_RS11010 pilE 2108546..2108863 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V50_RS11015 - 2109193..2109384 (+) 192 WP_014580443.1 hypothetical protein -
  G4V50_RS11020 - 2109448..2110137 (-) 690 WP_003696506.1 M48 family metallopeptidase -
  G4V50_RS11025 - 2110134..2110877 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=371249 G4V50_RS12285 WP_125121586.1 2105456..2105941(-) (pilE) [Neisseria gonorrhoeae strain SRRSH214]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=371249 G4V50_RS12285 WP_125121586.1 2105456..2105941(-) (pilE) [Neisseria gonorrhoeae strain SRRSH214]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453