Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   LPA_RS00715 Genome accession   NC_014125
Coordinates   163988..164680 (+) Length   230 a.a.
NCBI ID   WP_011945329.1    Uniprot ID   A0A378K048
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 158988..169680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS15715 (lpa_00192) - 159610..159786 (-) 177 WP_011945326.1 dodecin domain-containing protein -
  LPA_RS00700 (lpa_00194) - 159964..162432 (+) 2469 WP_011945327.1 hypothetical protein -
  LPA_RS00705 (lpa_00195) dapB 162536..163267 (-) 732 WP_011945328.1 4-hydroxy-tetrahydrodipicolinate reductase -
  LPA_RS00710 (lpa_00197) - 163446..163631 (-) 186 WP_011212782.1 hypothetical protein -
  LPA_RS00715 (lpa_00201) rocC 163988..164680 (+) 693 WP_011945329.1 ProQ/FinO family protein Regulator
  LPA_RS00720 (lpa_00203) - 164681..165751 (+) 1071 WP_011945330.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25761.64 Da        Isoelectric Point: 10.7030

>NTDB_id=37119 LPA_RS00715 WP_011945329.1 163988..164680(+) (rocC) [Legionella pneumophila 2300/99 Alcoy]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAENASMKIKKRVEKSVKNARKQVNAKAANHSHVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=37119 LPA_RS00715 WP_011945329.1 163988..164680(+) (rocC) [Legionella pneumophila 2300/99 Alcoy]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGCGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGCGGA
GGTTACTGAGGAAGAAGCGGAGAATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K048

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

99.13

100

0.991

Multiple sequence alignment