Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V54_RS12345 Genome accession   NZ_CP048896
Coordinates   2108034..2108519 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103034..2113519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS12505 - 2103889..2104007 (-) 119 Protein_2133 pilin -
  G4V54_RS11005 - 2104130..2104450 (-) 321 Protein_2134 pilin -
  G4V54_RS12335 - 2104511..2104894 (-) 384 Protein_2135 pilin -
  G4V54_RS11010 lpxC 2105039..2105962 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G4V54_RS11015 - 2106456..2106838 (-) 383 Protein_2137 pilin -
  G4V54_RS12340 pilE 2106973..2107458 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V54_RS11030 - 2107515..2107899 (-) 385 Protein_2139 pilin -
  G4V54_RS12345 pilE 2108034..2108519 (-) 486 WP_125121586.1 pilin Machinery gene
  G4V54_RS11045 - 2108576..2108923 (-) 348 Protein_2141 pilin -
  G4V54_RS11050 - 2108976..2109369 (-) 394 Protein_2142 pilin -
  G4V54_RS11055 - 2109504..2109946 (-) 443 Protein_2143 pilin -
  G4V54_RS12510 pilE 2110482..2111132 (-) 651 WP_279380562.1 pilin Machinery gene
  G4V54_RS11065 pilE 2111140..2111457 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V54_RS11070 - 2111787..2111978 (+) 192 WP_014580443.1 hypothetical protein -
  G4V54_RS11075 - 2112042..2112731 (-) 690 WP_003696506.1 M48 family metallopeptidase -
  G4V54_RS11080 - 2112728..2113471 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=371178 G4V54_RS12345 WP_125121586.1 2108034..2108519(-) (pilE) [Neisseria gonorrhoeae strain SRRSH229]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=371178 G4V54_RS12345 WP_125121586.1 2108034..2108519(-) (pilE) [Neisseria gonorrhoeae strain SRRSH229]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453