Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FI644_RS17450 Genome accession   NZ_CP041305
Coordinates   3485500..3487188 (+) Length   562 a.a.
NCBI ID   WP_053476949.1    Uniprot ID   A0A0Q3QS48
Organism   Cytobacillus solani strain 5L6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3480500..3492188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI644_RS17430 - 3480690..3481583 (+) 894 WP_053476953.1 polyprenyl synthetase family protein -
  FI644_RS17435 dxs 3481901..3483793 (+) 1893 WP_053476952.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FI644_RS17440 - 3483796..3484641 (+) 846 WP_053476951.1 TlyA family RNA methyltransferase -
  FI644_RS17445 argR 3484853..3485302 (+) 450 WP_053476950.1 transcriptional regulator AhrC/ArgR -
  FI644_RS17450 recN 3485500..3487188 (+) 1689 WP_053476949.1 DNA repair protein RecN Machinery gene
  FI644_RS17455 spoIVB 3487311..3488600 (+) 1290 WP_053476948.1 SpoIVB peptidase -
  FI644_RS17460 spo0A 3488858..3489646 (+) 789 WP_053476947.1 sporulation transcription factor Spo0A -
  FI644_RS17465 - 3489739..3489882 (-) 144 WP_075209181.1 YycC family protein -
  FI644_RS17470 - 3489910..3490632 (+) 723 WP_053476946.1 glycerophosphodiester phosphodiesterase -
  FI644_RS17475 - 3490670..3490903 (-) 234 WP_053476945.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63458.29 Da        Isoelectric Point: 4.9128

>NTDB_id=371171 FI644_RS17450 WP_053476949.1 3485500..3487188(+) (recN) [Cytobacillus solani strain 5L6]
MITELSIRNFAIIEALSISFDKGLTVLSGETGAGKSIIIDAIHLLVGGRGSAEFVRHGSEKAEIEGLFQLDDPNHPCFAK
ANEFGIELEDGMAILRRDISSNGKSVCRINGKLVTISTLREIGSTLIDIHGQHEHQELMDETMHLSLLDQFGGEKITSAL
KEYQQVYHTYEQKVKQLKNLSENDQQMAHRLDLIQFQLDEIRSADLKLNEDEEMLEEKRKLSNFERVYDSLQSGYNGLQG
EYKGLDWIGLVMGHIQNAAELDPAYKELAESVSNSFYQLEDAARTIRNEMDFLEYDPVRLAEIEDRLNEINQLKRKYGKT
VEEVLEYASKIEEEIETLLNKETHIDQLEKEIASLKKDLLIEAEELSALRKISAQNLTEFIHKELKELYMEKTVFEVQFI
KNTESFMRNGMDKGEFYISTNPGEPLKPLSKIASGGELSRIMLALKSILSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
KVAVNSQVLCISHLPQVAAMADTHLYIAKNIIDGRTKTTVKSLNESEKIKEIGRMISGVEITELTKEHAKELLQLAEQLK
IH

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=371171 FI644_RS17450 WP_053476949.1 3485500..3487188(+) (recN) [Cytobacillus solani strain 5L6]
ATGATAACTGAATTATCGATAAGAAATTTTGCAATTATTGAAGCCCTATCAATTTCCTTTGATAAGGGCTTAACTGTATT
AAGCGGGGAAACAGGAGCGGGAAAATCAATTATTATTGATGCTATACATTTACTTGTAGGTGGAAGAGGATCTGCTGAGT
TTGTCCGTCATGGATCCGAAAAGGCGGAAATTGAAGGATTATTTCAACTAGACGATCCAAACCATCCATGCTTTGCAAAA
GCAAATGAATTTGGCATTGAGCTTGAGGATGGAATGGCTATTTTACGAAGAGATATTTCTAGCAATGGAAAAAGTGTTTG
TCGAATAAACGGAAAGCTTGTTACAATTTCAACTTTAAGGGAAATTGGCAGTACACTTATTGATATACATGGACAGCATG
AGCATCAAGAGCTCATGGATGAAACGATGCACCTTTCTCTTCTTGATCAATTTGGAGGCGAAAAGATTACTTCGGCTCTT
AAAGAATACCAGCAAGTGTACCATACTTACGAGCAAAAGGTAAAACAATTAAAGAATCTAAGCGAAAATGACCAGCAAAT
GGCACATCGACTTGATTTGATTCAATTTCAGCTTGATGAAATTCGCTCAGCTGACTTGAAGTTAAATGAAGATGAGGAGA
TGCTAGAAGAAAAACGGAAGCTTAGTAACTTTGAACGGGTATATGATTCCTTGCAATCAGGTTACAATGGATTACAAGGA
GAATATAAAGGGCTGGATTGGATTGGGCTAGTGATGGGGCATATTCAAAATGCGGCAGAGCTTGATCCTGCATATAAGGA
ATTAGCCGAGTCTGTTTCTAATAGCTTCTATCAGCTGGAAGACGCAGCACGCACGATTCGTAATGAAATGGATTTTCTTG
AATATGATCCAGTTAGATTAGCCGAAATCGAAGATAGATTGAATGAAATCAATCAATTGAAGCGGAAATATGGCAAAACT
GTAGAAGAAGTCTTGGAATATGCTTCGAAAATTGAGGAAGAAATAGAAACATTGTTAAATAAGGAAACGCATATTGACCA
ACTAGAAAAGGAAATTGCTTCTCTAAAGAAGGACCTTTTAATCGAAGCAGAAGAATTAAGTGCACTTCGGAAAATTTCCG
CACAAAATTTAACAGAATTTATTCACAAAGAATTAAAAGAGCTCTATATGGAGAAAACTGTATTTGAGGTTCAATTTATC
AAAAATACAGAAAGCTTCATGAGGAATGGAATGGATAAAGGTGAATTTTATATTTCTACAAATCCAGGGGAACCATTAAA
GCCCCTTTCTAAAATTGCCTCAGGAGGAGAGCTTTCTAGAATTATGCTTGCGTTAAAGAGTATTCTTTCTAAGCATCAAG
GCGTAACCTCCATCATATTTGATGAAGTTGACACGGGAGTAAGTGGCCGGGTTGCCCAGGCAATTGCAGAAAAGATTCAT
AAAGTGGCTGTTAATTCCCAAGTTTTATGTATTTCTCATTTGCCTCAAGTGGCAGCAATGGCTGACACACATTTATATAT
TGCAAAGAATATCATTGATGGACGAACAAAAACAACGGTTAAATCACTAAATGAATCCGAAAAGATTAAAGAAATTGGCC
GGATGATTTCTGGTGTCGAAATTACTGAATTAACGAAGGAACATGCAAAGGAGCTTCTTCAACTTGCAGAGCAATTAAAG
ATACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3QS48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.976

100

0.623

Multiple sequence alignment