Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   METIN_RS01590 Genome accession   NC_014122
Coordinates   290869..292395 (+) Length   508 a.a.
NCBI ID   WP_013099734.1    Uniprot ID   D5VQY5
Organism   Methanocaldococcus infernus ME     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285869..297395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METIN_RS01560 (Metin_0312) - 286658..287095 (+) 438 WP_013099728.1 universal stress protein -
  METIN_RS01565 (Metin_0313) - 287076..288251 (-) 1176 WP_013099729.1 NAD(P)/FAD-dependent oxidoreductase -
  METIN_RS01570 (Metin_0314) - 288251..288427 (-) 177 WP_013099730.1 ATP-binding protein -
  METIN_RS01575 (Metin_0315) - 288458..289186 (-) 729 WP_013099731.1 KaiC domain-containing protein -
  METIN_RS01580 (Metin_0316) - 289188..289487 (-) 300 WP_013099732.1 hypothetical protein -
  METIN_RS01585 (Metin_0317) gatD 289506..290753 (-) 1248 WP_013099733.1 Glu-tRNA(Gln) amidotransferase subunit GatD -
  METIN_RS01590 (Metin_0318) epdL 290869..292395 (+) 1527 WP_013099734.1 CpaF family protein Machinery gene
  METIN_RS01595 (Metin_0319) - 292401..293438 (+) 1038 WP_013099735.1 type II secretion system F family protein -
  METIN_RS01600 (Metin_0320) - 293440..294339 (+) 900 WP_013099736.1 type II secretion system F family protein -
  METIN_RS01605 (Metin_0321) - 294325..294825 (-) 501 WP_013099737.1 TIGR00295 family protein -
  METIN_RS01610 (Metin_0322) tfe 294822..295373 (-) 552 WP_013099738.1 transcription factor E -
  METIN_RS01615 (Metin_0323) - 295370..296410 (-) 1041 WP_332247459.1 ATP-grasp domain-containing protein -
  METIN_RS01620 (Metin_0324) mptA 296382..297323 (-) 942 WP_013099740.1 GTP cyclohydrolase MptA -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 58094.15 Da        Isoelectric Point: 6.2149

>NTDB_id=37115 METIN_RS01590 WP_013099734.1 290869..292395(+) (epdL) [Methanocaldococcus infernus ME]
MGILDKLRKEPDKKKEKILKKDSESEILDKYSVKVDEIECEVFIVREGGFTYYRIPDVDKIYESLKELEKGNYFNLIKTQ
ITDLGLVTYEQIRDYILNFSLRYDINIPNIDELAKFYYLLIGRLGLLEIPLNDPNLEEVMVNGYNHPVFVFHRKHQMCET
NIVLDRNEVDRIIESIASLVNRTIDSRVPMLDAFLPDGSRVNATTSDICMNGATITIRKFSREPLTVIDLINFGTLDVDT
AAFLWQAVEGYFGAKPANSLIVGGTGSGKTTLLNVLSLFSMYNERIITIEDTPELQIPHRHVIRLITRPARPGMPEYEVT
MDDLVKNALRMRPDRIFVGEVRGKEAYSLLVAMNTGHDGCSGTLHANSADEAILRLLSPPMNVPPIMLNSLNFIINIQRI
RRGGKTLRRILGIIEVLPSGGETEIAKTTLYEYSATKDGLERKGVCMWEEEVCEIAGISREELFRDRNMRKRLLTYLYKN
NIRKLEDVAKYIREFQINPENALKKLTS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=37115 METIN_RS01590 WP_013099734.1 290869..292395(+) (epdL) [Methanocaldococcus infernus ME]
ATGGGTATCCTTGATAAGTTAAGAAAAGAACCTGATAAGAAAAAAGAGAAAATTTTAAAAAAAGATAGTGAGTCTGAGAT
TTTAGATAAATATAGTGTAAAAGTTGATGAAATTGAGTGTGAAGTATTTATAGTTAGGGAAGGAGGATTTACTTACTATA
GAATTCCTGATGTAGATAAAATATATGAGTCTCTCAAAGAGTTGGAAAAGGGTAACTATTTTAACCTTATAAAAACCCAA
ATTACAGATCTTGGATTAGTAACTTATGAGCAAATTAGGGACTATATCCTAAACTTTTCTTTGAGATATGATATAAATAT
TCCAAATATTGATGAATTAGCCAAATTTTACTATTTATTGATAGGAAGGCTTGGACTATTAGAGATTCCTCTGAATGATC
CTAACTTAGAGGAAGTTATGGTTAATGGTTATAATCATCCTGTCTTTGTTTTTCATAGGAAACATCAGATGTGTGAAACC
AACATAGTGTTAGATAGAAATGAAGTAGATAGAATTATAGAGAGTATAGCCTCTTTAGTCAATAGAACTATAGATTCAAG
GGTTCCTATGTTAGATGCCTTCCTACCAGATGGTAGTAGGGTTAATGCCACAACCTCAGACATTTGTATGAATGGAGCAA
CAATAACTATAAGAAAGTTCTCAAGAGAGCCTTTAACTGTTATAGACTTAATAAACTTTGGAACCTTAGATGTAGATACA
GCTGCCTTCCTCTGGCAGGCTGTTGAAGGTTATTTTGGAGCTAAGCCAGCTAACTCATTGATTGTTGGAGGAACAGGTTC
AGGAAAAACTACATTATTAAATGTTCTCTCTTTATTTTCTATGTATAATGAAAGAATTATTACTATTGAAGATACTCCAG
AATTACAGATCCCACATAGGCATGTTATTAGGTTAATAACAAGGCCAGCAAGGCCTGGGATGCCAGAGTATGAAGTAACT
ATGGATGATCTTGTAAAAAATGCTCTTAGAATGAGGCCTGACAGAATATTTGTTGGAGAGGTTAGAGGAAAGGAAGCTTA
TTCCCTATTGGTGGCTATGAATACAGGACATGATGGATGCTCAGGAACATTACATGCCAATAGTGCAGATGAGGCAATAT
TAAGACTTCTAAGTCCTCCTATGAATGTTCCTCCTATTATGTTGAATTCTCTAAACTTCATTATAAACATCCAAAGAATT
AGGAGAGGAGGGAAAACCCTTAGAAGAATATTAGGGATTATAGAAGTGTTACCAAGTGGAGGAGAAACTGAAATAGCAAA
GACAACACTCTATGAATACAGTGCTACCAAAGACGGGCTGGAGAGGAAAGGAGTTTGTATGTGGGAAGAAGAGGTTTGTG
AAATTGCTGGAATTTCAAGAGAAGAGCTTTTTAGAGACAGAAATATGAGAAAAAGACTTTTAACTTACTTATATAAAAAT
AATATTAGAAAGTTGGAGGATGTTGCAAAGTATATAAGAGAATTTCAGATAAATCCTGAGAATGCTCTTAAAAAACTTAC
AAGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(133-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5VQY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

60.612

96.457

0.585

Multiple sequence alignment