Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FI644_RS09205 Genome accession   NZ_CP041305
Coordinates   1784788..1786167 (-) Length   459 a.a.
NCBI ID   WP_053478289.1    Uniprot ID   A0A0Q3RB35
Organism   Cytobacillus solani strain 5L6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779788..1791167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI644_RS09185 ispF 1781198..1781677 (-) 480 WP_053478285.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FI644_RS09190 ispD 1781703..1782392 (-) 690 WP_053478286.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FI644_RS09195 - 1782414..1783496 (-) 1083 WP_053478287.1 PIN/TRAM domain-containing protein -
  FI644_RS09200 disA 1783711..1784784 (-) 1074 WP_053478288.1 DNA integrity scanning diadenylate cyclase DisA -
  FI644_RS09205 radA 1784788..1786167 (-) 1380 WP_053478289.1 DNA repair protein RadA Machinery gene
  FI644_RS09210 clpC 1786324..1788774 (-) 2451 WP_142108242.1 ATP-dependent protease ATP-binding subunit ClpC -
  FI644_RS09215 - 1788791..1789858 (-) 1068 WP_056681715.1 protein arginine kinase -
  FI644_RS09220 - 1789860..1790408 (-) 549 WP_053478292.1 UvrB/UvrC motif-containing protein -
  FI644_RS09225 - 1790434..1790895 (-) 462 WP_053478293.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49832.28 Da        Isoelectric Point: 7.4031

>NTDB_id=371144 FI644_RS09205 WP_053478289.1 1784788..1786167(-) (radA) [Cytobacillus solani strain 5L6]
MAKRKTKFMCQECGYESPKWMGKCPGCGEWNKMIEEVEKPATSRRGAFAHSAGSTILSKATPINAIETVSEPRIYTDLNE
LNRVLGGGVVRGSLVLIGGDPGIGKSTLLLQVSSQLANKNHSVLYISGEESMRQTKLRADRLGVSSDNLLVYSETSLEEI
SRTIDQVNPSFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKPTDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVILPSNNLGGWKGPKGVELIGVGSVSEALKATLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=371144 FI644_RS09205 WP_053478289.1 1784788..1786167(-) (radA) [Cytobacillus solani strain 5L6]
ATGGCCAAAAGGAAAACAAAGTTTATGTGCCAGGAATGCGGGTATGAATCACCAAAGTGGATGGGGAAATGCCCGGGCTG
TGGCGAGTGGAATAAAATGATCGAAGAAGTAGAGAAGCCTGCTACCTCAAGAAGGGGAGCATTTGCCCATTCCGCAGGAT
CGACCATTCTCTCAAAGGCGACGCCAATAAACGCTATTGAGACGGTAAGTGAGCCAAGAATATATACAGATTTAAATGAA
CTTAATCGTGTACTTGGAGGAGGAGTAGTTAGAGGTTCTCTTGTGTTAATCGGCGGTGATCCTGGAATCGGTAAATCTAC
GCTTCTCCTGCAGGTTTCATCCCAACTTGCTAATAAAAACCACTCTGTTTTGTATATATCTGGAGAAGAATCCATGCGTC
AAACGAAATTAAGAGCGGACCGTTTGGGTGTTTCTTCAGATAATTTATTAGTCTACTCGGAGACAAGTCTTGAAGAAATC
AGCAGGACAATCGATCAAGTAAATCCAAGCTTTGTAATCATTGATTCAATTCAAACAATCTTTCATCCAGAGGTTACTTC
AGCACCTGGAAGTGTTTCTCAAGTAAGGGAGTGCACGGCTGAGTTAATGAGAATCGGGAAGACAAAAGGAATTGCCATTT
TCATAGTTGGGCATGTTACAAAGGAAGGCTCTATAGCCGGACCGAGACTATTGGAGCATATGGTTGATACTGTGCTTTAT
TTTGAGGGCGAACGCCACCATACATATCGTATTTTACGAGCAGTAAAAAACAGGTTTGGATCTACAAATGAAATGGGAAT
TTTCGAAATGAAGGAGTTTGGATTGGAAGAGGTAGAAAATCCGTCCGAAATTTTCCTAGAGGAAAGATCCCAAGGTGCAG
CAGGATCAACTGTTGTTGCATCGATGGAAGGAACACGTCCAGTTCTCGTGGAGATACAGGCGCTTATTTCCCCAACAAGC
TTTGGAAATCCAAGAAGAATGGCAACGGGAATTGACCATAACCGTGTGCCATTGCTAATGGCAGTACTAGAAAAAAGGGT
AGGGATGCTCCTGCAGAACCAAGATGCTTATTTAAAGGTAGCTGGTGGAGTAAAGCTAGATGAGCCTGCTATCGATTTAG
CTATTGCTGTCAGTATTGCATCTAGTTTTCGTGATAAGCCAACTAAACCTACGGATTGTATTATTGGAGAAGTTGGATTA
ACTGGTGAAGTCAGAAGGGTCTCAAGAATTGAGCAACGGGTTCAGGAAGCTGCAAAGCTTGGCTTTGAACGAGTCATTCT
ACCATCTAATAATCTTGGTGGCTGGAAGGGACCAAAAGGAGTAGAACTAATAGGGGTAGGTTCTGTTAGTGAAGCATTAA
AAGCGACATTAGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3RB35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.957

100

0.771
  radA Streptococcus mitis NCTC 12261

61.894

98.911

0.612
  radA Streptococcus pneumoniae Rx1

61.233

98.911

0.606
  radA Streptococcus pneumoniae D39

61.233

98.911

0.606
  radA Streptococcus pneumoniae R6

61.233

98.911

0.606
  radA Streptococcus pneumoniae TIGR4

61.233

98.911

0.606
  radA Streptococcus mitis SK321

61.013

98.911

0.603

Multiple sequence alignment