Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FI644_RS00470 Genome accession   NZ_CP041305
Coordinates   81659..83476 (-) Length   605 a.a.
NCBI ID   WP_142107854.1    Uniprot ID   -
Organism   Cytobacillus solani strain 5L6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 76659..88476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI644_RS00435 - 76959..77591 (-) 633 WP_053475269.1 GTP pyrophosphokinase family protein -
  FI644_RS00440 - 77672..78043 (-) 372 WP_053475268.1 hypothetical protein -
  FI644_RS00445 - 78168..78755 (+) 588 WP_053475267.1 CYTH domain-containing protein -
  FI644_RS00450 - 78774..79412 (+) 639 WP_053475266.1 lytic transglycosylase domain-containing protein -
  FI644_RS00455 - 79726..80133 (+) 408 WP_053475265.1 globin -
  FI644_RS00460 - 80130..81017 (+) 888 WP_053475264.1 ClpXP adapter SpxH family protein -
  FI644_RS00470 pepF 81659..83476 (-) 1818 WP_142107854.1 oligoendopeptidase F Regulator
  FI644_RS00475 - 83609..84805 (-) 1197 WP_053475261.1 competence protein CoiA -
  FI644_RS00480 cls 84901..86418 (-) 1518 WP_053475260.1 cardiolipin synthase -
  FI644_RS00485 mecA 86502..87164 (-) 663 WP_053475259.1 adaptor protein MecA -
  FI644_RS00490 spxA 87557..87952 (-) 396 WP_053475258.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69649.99 Da        Isoelectric Point: 4.7683

>NTDB_id=371128 FI644_RS00470 WP_142107854.1 81659..83476(-) (pepF) [Cytobacillus solani strain 5L6]
MANETAVKKLPNRSEISVEDTWKLEDIFASDDAWDKEYKEVEALVPEASQYQGKLGESANQLYEALQYQDHLLERLSKLY
TYAHMRYDQDTTNSFYQGMDDRIKGLYSKAASSLAYIVPELLAVDEGKINAFLEEKEELKVYKHSLEEINLQRPHVLSAE
AESLLAQASEVFGASSNTFGMLNNADLEFPSITDENGEEVEITHGRYIRFLESDDQRVRHDAFKAVYDTYGKFRNTFAST
LSGNVKTNNFNAKVRNYDSARHAALAANNIPESVYDNLVKTVNDNLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVKM
EVKYDEAKELILKGLAPLGDDYLNVLKEGFDNRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNESLLNDYLLKTIDDEKKRLFLLNHYLEGFRGTVFRQTMFAEFEHLIYQKVQ
NNEALTAESLTKEYYELNKKYFGEEDLVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGNPAVERYIEF
LKAGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLIEMENLLG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=371128 FI644_RS00470 WP_142107854.1 81659..83476(-) (pepF) [Cytobacillus solani strain 5L6]
ATGGCTAACGAAACAGCAGTTAAAAAACTTCCGAATAGAAGTGAAATCTCTGTAGAGGATACATGGAAACTGGAGGATAT
TTTTGCTAGTGATGATGCATGGGATAAAGAATACAAGGAAGTAGAAGCTCTAGTACCAGAAGCAAGCCAGTATCAAGGGA
AACTTGGTGAAAGTGCAAATCAATTGTATGAAGCCCTTCAATATCAGGATCACCTCTTAGAACGTCTCTCAAAGCTTTAT
ACATATGCACATATGCGCTATGACCAAGATACAACAAATTCCTTTTATCAGGGGATGGATGACCGGATTAAAGGCTTATA
CTCCAAAGCAGCAAGCAGTCTTGCCTATATTGTTCCAGAACTACTTGCTGTTGATGAGGGGAAAATTAATGCCTTTTTAG
AGGAAAAGGAAGAGCTGAAAGTTTACAAGCATTCGTTGGAAGAAATTAATCTTCAGCGTCCACATGTTTTATCTGCTGAG
GCGGAAAGTCTACTTGCACAAGCTTCTGAAGTATTCGGTGCATCAAGCAATACGTTCGGCATGCTAAATAATGCAGATCT
TGAGTTCCCGTCTATTACAGATGAAAATGGGGAGGAAGTGGAGATTACTCATGGGCGCTATATCCGCTTTCTTGAAAGCG
ATGATCAGCGAGTAAGACATGATGCGTTCAAAGCTGTCTATGACACATATGGCAAGTTCCGCAATACATTTGCAAGTACA
TTAAGCGGAAATGTGAAAACAAATAATTTTAATGCCAAAGTAAGAAATTATGATTCTGCCCGTCATGCCGCACTTGCAGC
TAATAATATTCCTGAATCTGTCTATGATAATCTTGTAAAAACAGTGAACGATAACCTTCACCTATTACACCGCTATGTCA
AGCTGCGTAAAAAAGTACTTGGTTTAGAAGAGCTTCATATGTACGACCTATATACACCTCTTGTAAAAGATGTGAAAATG
GAAGTGAAATATGATGAAGCAAAGGAATTAATATTAAAAGGATTAGCACCTTTAGGGGACGACTATCTAAATGTCCTAAA
AGAAGGCTTTGATAATCGCTGGGTGGATGTCCATGAAAATAAAGGGAAGCGGAGCGGTGCCTACTCATCCGGAACATACG
GAACTAACCCATATATTTTGATGAACTGGCAGGACAATGTGAACAATCTGTTTACCCTTGCACATGAATTTGGCCATTCT
GTTCATAGTTACTATACAAGGAAATCTCAGCCGTACCCGTATGGAAACTATTCGATTTTTGTTGCTGAAGTTGCGTCCAC
ATGCAATGAATCGCTCCTTAATGATTATTTGCTGAAGACGATCGATGATGAGAAGAAGCGTTTATTCTTGCTAAATCATT
ATTTAGAAGGCTTTAGAGGAACAGTATTCCGTCAAACGATGTTTGCAGAATTTGAGCATCTCATTTATCAGAAGGTACAA
AATAATGAAGCGTTAACCGCTGAATCATTAACAAAGGAATATTATGAGCTGAATAAGAAGTATTTTGGTGAAGAGGATCT
TGTTATTGATGAGGAAATTGGATTAGAGTGGTCTCGAATCCCGCATTTCTATTACAATTACTATGTTTATCAGTATGCAA
CTGGCTTCAGTGCAGCGACAGCACTAAGCAAACAAATTTTAGAAGAAGGCAACCCAGCGGTAGAGCGATATATCGAATTT
CTTAAAGCAGGTAGCTCCGATTACCCAATTGAGGTATTAAAGAAAGCAGGAGTAGATATGACCAGCTCAAAACCAATTGA
GGATGCATGTAAAGTATTTGAGGAAAAATTAATTGAAATGGAAAACCTGCTAGGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.42

98.347

0.496

Multiple sequence alignment