Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FK538_RS02220 Genome accession   NZ_CP041295
Coordinates   457314..458192 (+) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain 80-1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452314..463192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK538_RS02190 (FK538_02200) wrbA 453130..453726 (+) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -
  FK538_RS02195 - 454028..454204 (+) 177 WP_158649863.1 hypothetical protein -
  FK538_RS02200 (FK538_02205) - 454262..454642 (-) 381 WP_005182135.1 hypothetical protein -
  FK538_RS02205 (FK538_02210) - 454859..455434 (-) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  FK538_RS02210 (FK538_02215) - 455524..456237 (-) 714 WP_045796415.1 DUF3108 domain-containing protein -
  FK538_RS02215 (FK538_02220) - 456391..457074 (-) 684 WP_045796416.1 hypothetical protein -
  FK538_RS02220 (FK538_02225) tonB2 457314..458192 (+) 879 WP_005182159.1 energy transducer TonB Machinery gene
  FK538_RS02225 (FK538_02230) - 458189..458479 (-) 291 WP_075168292.1 antibiotic biosynthesis monooxygenase family protein -
  FK538_RS02230 (FK538_02235) ybeY 458568..459050 (-) 483 WP_075168291.1 rRNA maturation RNase YbeY -
  FK538_RS02235 (FK538_02240) - 459070..460143 (-) 1074 WP_016659561.1 PhoH family protein -
  FK538_RS02240 (FK538_02245) miaB 460185..461639 (-) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=371036 FK538_RS02220 WP_005182159.1 457314..458192(+) (tonB2) [Acinetobacter indicus strain 80-1-2]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=371036 FK538_RS02220 WP_005182159.1 457314..458192(+) (tonB2) [Acinetobacter indicus strain 80-1-2]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGATCAGCAAGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACTACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTAGAAGAATTGAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCAGCCAAGC
AGCAACAGCTGGCCGGTGAAGTGCGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGGCATGCCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTGCGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment