Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | AbD4_RS16730 | Genome accession | NZ_CP048849 |
| Coordinates | 3515013..3515528 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain D4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3510013..3520528
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AbD4_RS16710 (AbD4_03370) | - | 3510375..3511835 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| AbD4_RS16715 (AbD4_03371) | - | 3512112..3513317 (+) | 1206 | WP_000512698.1 | RtcB family protein | - |
| AbD4_RS16720 (AbD4_03372) | - | 3513321..3513479 (+) | 159 | WP_000692859.1 | hypothetical protein | - |
| AbD4_RS16725 (AbD4_03373) | omp38 | 3513604..3514632 (-) | 1029 | WP_000777889.1 | outer membrane protein Omp38 | - |
| AbD4_RS16730 (AbD4_03374) | fimT | 3515013..3515528 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| AbD4_RS16735 (AbD4_03375) | - | 3515637..3516812 (+) | 1176 | WP_000129969.1 | thiolase family protein | - |
| AbD4_RS16740 (AbD4_03376) | - | 3516939..3517382 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| AbD4_RS16745 (AbD4_03377) | - | 3517425..3517778 (-) | 354 | WP_000457779.1 | DMT family transporter | - |
| AbD4_RS16750 (AbD4_03378) | - | 3517860..3518345 (-) | 486 | WP_000935248.1 | DUF934 domain-containing protein | - |
| AbD4_RS16755 (AbD4_03379) | - | 3518338..3519981 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=371015 AbD4_RS16730 WP_000477151.1 3515013..3515528(+) (fimT) [Acinetobacter baumannii strain D4]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=371015 AbD4_RS16730 WP_000477151.1 3515013..3515528(+) (fimT) [Acinetobacter baumannii strain D4]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |