Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FK537_RS06805 Genome accession   NZ_CP041291
Coordinates   1330256..1330582 (-) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain 94-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1325256..1335582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS06785 (FK537_06855) - 1325452..1326159 (-) 708 WP_075167805.1 FHA domain-containing protein -
  FK537_RS06790 (FK537_06860) gspD 1326226..1328475 (-) 2250 WP_168369793.1 type II secretion system secretin GspD -
  FK537_RS06795 (FK537_06865) - 1328516..1329352 (-) 837 WP_168369794.1 type II secretion system protein N -
  FK537_RS06800 (FK537_06870) gspN 1329352..1330092 (-) 741 WP_005181650.1 type II secretion system protein N -
  FK537_RS06805 (FK537_06875) hns 1330256..1330582 (-) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  FK537_RS06810 (FK537_06880) - 1330728..1331156 (-) 429 WP_168369795.1 acyl-CoA thioesterase -
  FK537_RS06815 (FK537_06885) - 1331167..1332360 (-) 1194 WP_168369796.1 heme biosynthesis protein HemY -
  FK537_RS06820 (FK537_06890) - 1332363..1333208 (-) 846 WP_104495020.1 hypothetical protein -
  FK537_RS06825 (FK537_06895) - 1333205..1333984 (-) 780 WP_168369797.1 uroporphyrinogen-III synthase -
  FK537_RS06830 (FK537_06900) hemC 1333986..1334903 (-) 918 WP_034598116.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=370995 FK537_RS06805 WP_005181647.1 1330256..1330582(-) (hns) [Acinetobacter indicus strain 94-2]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=370995 FK537_RS06805 WP_005181647.1 1330256..1330582(-) (hns) [Acinetobacter indicus strain 94-2]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAGGCATTAATTGCATCAAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTCCGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACGGGTCGTGGTAAGCAACCACGCTGGTTAGTGGCGGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment