Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   FK537_RS01050 Genome accession   NZ_CP041291
Coordinates   144322..144693 (-) Length   123 a.a.
NCBI ID   WP_228288776.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139322..149693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS01020 (FK537_01040) tadA 139564..140085 (-) 522 WP_168369501.1 tRNA adenosine(34) deaminase TadA -
  FK537_RS01025 (FK537_01045) - 140089..141213 (-) 1125 WP_168369502.1 enoyl-CoA hydratase/isomerase family protein -
  FK537_RS01030 (FK537_01050) ung 141210..141923 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  FK537_RS01035 (FK537_01055) - 141965..142561 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  FK537_RS01040 (FK537_01060) gspK 142710..143657 (-) 948 WP_104470113.1 type II secretion system minor pseudopilin GspK -
  FK537_RS01045 (FK537_01065) xcpW 143690..144325 (-) 636 WP_104489735.1 type II secretion system minor pseudopilin GspJ Machinery gene
  FK537_RS01050 (FK537_01070) xcpV 144322..144693 (-) 372 WP_228288776.1 type II secretion system minor pseudopilin GspI Machinery gene
  FK537_RS01055 (FK537_01075) - 144809..145381 (-) 573 WP_075174514.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FK537_RS01060 (FK537_01080) - 145387..146001 (-) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  FK537_RS01065 (FK537_01085) - 146062..146835 (-) 774 WP_005177502.1 TatD family hydrolase -
  FK537_RS01070 (FK537_01090) - 146865..147206 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  FK537_RS01075 (FK537_01095) - 147218..148201 (-) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  FK537_RS01080 (FK537_01100) kdsB 148210..148974 (-) 765 WP_104472237.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13562.51 Da        Isoelectric Point: 5.5255

>NTDB_id=370983 FK537_RS01050 WP_228288776.1 144322..144693(-) (xcpV) [Acinetobacter indicus strain 94-2]
MAGFTLLEVMVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDK
SAQPTISPNVQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=370983 FK537_RS01050 WP_228288776.1 144322..144693(-) (xcpV) [Acinetobacter indicus strain 94-2]
ATTGCCGGTTTTACCTTGCTGGAAGTAATGGTGGCACTGGCGATTTTCGCTACAGCCGCCATGGCACTGACCCAAGTGGC
CATGCAATATACCCAGTCGACCTCTCATGCCATTTTAAGAACCAAAGCACAGTTTGTGGCCTTAAATGAACAGGCTCTAA
TGGAAATCCAACAGGACTGGCTGACGGGTACGCAATCAAAACAGGTTACCCTGCAAGGTGAAAGCTGGCAAATTGATAAA
AGCGCACAGCCGACCATTAGCCCGAATGTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGT
TGAAGCCGGCATCACCCATTTGGTGTTTTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(40-98)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

78.151

96.748

0.756

Multiple sequence alignment