Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECL_RS13190 Genome accession   NC_014121
Coordinates   2726583..2727209 (-) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae subsp. cloacae ATCC 13047     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2721583..2732209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECL_RS13175 (ECL_02684) helD 2721821..2723875 (-) 2055 WP_044158573.1 DNA helicase IV -
  ECL_RS13180 (ECL_02685) - 2723998..2724444 (+) 447 WP_013097253.1 YccF domain-containing protein -
  ECL_RS13185 (ECL_02686) yccS 2724464..2726626 (+) 2163 WP_013097254.1 YccS family putative transporter -
  ECL_RS13190 (ECL_02687) sxy/tfoX 2726583..2727209 (-) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  ECL_RS13195 (ECL_02688) sulA 2727427..2727936 (+) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  ECL_RS13200 (ECL_02689) ompA 2728291..2729346 (+) 1056 WP_044158562.1 porin OmpA -
  ECL_RS13205 (ECL_02690) matP 2729410..2729862 (-) 453 WP_013097258.1 macrodomain Ter protein MatP -
  ECL_RS13210 (ECL_02691) - 2730049..2731809 (+) 1761 WP_013097259.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=37097 ECL_RS13190 WP_013097255.1 2726583..2727209(-) (sxy/tfoX) [Enterobacter cloacae subsp. cloacae ATCC 13047]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=37097 ECL_RS13190 WP_013097255.1 2726583..2727209(-) (sxy/tfoX) [Enterobacter cloacae subsp. cloacae ATCC 13047]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCATTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAGAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment