Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FK495_RS01180 Genome accession   NZ_CP041281
Coordinates   288287..289195 (+) Length   302 a.a.
NCBI ID   WP_180811996.1    Uniprot ID   -
Organism   Candidatus Profftella armatura isolate JRPAMB3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283287..294195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK495_RS01165 (FK495_01165) dnaJ 284270..285391 (-) 1122 WP_180811993.1 molecular chaperone DnaJ -
  FK495_RS01170 (FK495_01170) dnaK 285525..287444 (-) 1920 WP_180811994.1 molecular chaperone DnaK -
  FK495_RS01175 (FK495_01175) grpE 287478..288107 (-) 630 WP_180811995.1 nucleotide exchange factor GrpE -
  FK495_RS01180 (FK495_01180) pilA 288287..289195 (+) 909 WP_180811996.1 signal recognition particle-docking protein FtsY Machinery gene
  FK495_RS01185 (FK495_01185) holA 289218..290243 (-) 1026 WP_180811997.1 DNA polymerase III subunit delta -
  FK495_RS01190 (FK495_01190) leuS 290273..292954 (-) 2682 WP_020915493.1 leucine--tRNA ligase -
  FK495_RS01195 (FK495_01195) lipA 293032..293913 (-) 882 WP_020915494.1 lipoyl synthase -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 34036.40 Da        Isoelectric Point: 10.3559

>NTDB_id=370958 FK495_RS01180 WP_180811996.1 288287..289195(+) (pilA) [Candidatus Profftella armatura isolate JRPAMB3]
MKINWITRLKESLSKTACNLKSLIVNKKIDKNLYNELESDLLKADVGFETTQFLLNELKKIIYSKKLFNTEQVRNVLHNL
LVNLLKSLEKPLIFKKCKPFVIMIVGVNGVGKTTTIGKLANYFKKRKKSVLLAACDTFRAAAYEQLLILGKYNDVPVISE
KKITDPAAIAFNAINIAQKKNTDIVIVDTSGRLSTQSHLMRELKKIKKVIEKKIFELPYEIFLIIDGNTGQNTLSQIKEF
SKILRITGLIITKLDGTTKGGILAAIAKKYSIPLYFIGIGEKIEDLQIFNAVDFVNALLNQN

Nucleotide


Download         Length: 909 bp        

>NTDB_id=370958 FK495_RS01180 WP_180811996.1 288287..289195(+) (pilA) [Candidatus Profftella armatura isolate JRPAMB3]
ATGAAAATAAATTGGATTACGCGTTTAAAAGAAAGTTTATCTAAAACTGCTTGTAACTTAAAATCTTTGATTGTGAATAA
AAAAATTGATAAAAATTTATATAATGAACTTGAATCAGATTTATTAAAAGCAGATGTTGGATTTGAAACTACACAATTTT
TGTTAAATGAATTAAAAAAAATTATATACTCAAAAAAATTATTTAACACAGAACAAGTTAGAAATGTTTTACATAATTTA
TTAGTAAACTTATTGAAATCATTAGAAAAACCATTAATTTTTAAAAAATGTAAACCATTTGTAATAATGATAGTTGGAGT
AAATGGAGTAGGTAAAACTACTACAATTGGTAAATTAGCGAATTATTTTAAAAAACGTAAAAAATCGGTATTATTAGCCG
CTTGTGATACTTTTCGCGCAGCTGCATATGAACAATTATTAATTTTAGGAAAATATAATGATGTTCCTGTGATATCCGAA
AAAAAAATTACTGATCCTGCCGCAATAGCTTTTAATGCGATAAATATAGCACAAAAAAAAAATACTGATATCGTAATAGT
AGATACATCTGGTAGATTATCAACTCAATCTCATTTAATGAGGGAATTAAAAAAAATTAAAAAAGTAATTGAAAAAAAAA
TATTTGAATTACCATATGAAATTTTTTTAATAATTGATGGAAATACAGGTCAAAACACATTATCTCAAATAAAAGAATTT
TCTAAAATTTTACGTATTACTGGTTTAATAATTACAAAATTAGATGGTACTACAAAAGGGGGTATATTAGCTGCGATTGC
AAAAAAATATTCTATACCTTTATATTTTATAGGTATTGGAGAAAAAATTGAAGACTTACAAATATTTAATGCAGTAGATT
TTGTAAATGCCTTATTAAATCAAAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(99-299)

SRP54-type protein, helical bundle domain (SRP54_N)

(21-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.355

100

0.487

Multiple sequence alignment