Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FG480_RS07250 Genome accession   NZ_CP041280
Coordinates   1356475..1357851 (+) Length   458 a.a.
NCBI ID   WP_003618262.1    Uniprot ID   Q1G8W1
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.1011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351475..1362851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG480_RS07220 (FG480_07220) - 1351539..1351772 (+) 234 WP_035175610.1 hypothetical protein -
  FG480_RS07225 (FG480_07225) - 1351834..1352778 (+) 945 WP_181729094.1 AAA family ATPase -
  FG480_RS07230 (FG480_07230) - 1352759..1354027 (+) 1269 WP_003618271.1 LlaJI family restriction endonuclease -
  FG480_RS07235 (FG480_07235) pepC 1354093..1355442 (-) 1350 WP_003618269.1 aminopeptidase C -
  FG480_RS07240 (FG480_07240) - 1355527..1355814 (-) 288 WP_003618267.1 hypothetical protein -
  FG480_RS07245 (FG480_07245) - 1355921..1356475 (+) 555 WP_003618265.1 dUTP diphosphatase -
  FG480_RS07250 (FG480_07250) radA 1356475..1357851 (+) 1377 WP_003618262.1 DNA repair protein RadA Machinery gene
  FG480_RS07255 (FG480_07255) - 1357961..1358908 (+) 948 WP_003618260.1 glycosyltransferase family 8 protein -
  FG480_RS07265 (FG480_07265) - 1359181..1360344 (+) 1164 Protein_1369 EAL domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50037.51 Da        Isoelectric Point: 6.6143

>NTDB_id=370950 FG480_RS07250 WP_003618262.1 1356475..1357851(+) (radA) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.1011]
MARARTQYKCRSCGYISASYLGRCPNCGAWNQFEKESQEVRQTSTKATPSRLMASVGAKEAVKMSTVKAEKEERVLTKSS
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQIKLRADRLGLGQSPMLLYPESNMEHI
RDQIDDVKPDFVVIDSIQTMNEPSLDSMVGSASQVREVTAELMKIAKLDQVTVFVIGHVTKEGSIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMKTEGLAEVTNPSAVFLDERLPDSTGSAVVVSLEGTRPILGEIQALVTPTA
FGYAKRTTSGLDYNRVSLLLAVLEKRGNLMLQNQDAYLSATGGIRLNEPAIDLAIAMAIASSYYDKEISATDCFVGEIGL
TGEVRRVNQIQARVKEAGKVGFKRIFIPKYNMSPALQDLGIEVIPVSSVRQALHYLFS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=370950 FG480_RS07250 WP_003618262.1 1356475..1357851(+) (radA) [Lactobacillus delbrueckii subsp. bulgaricus strain KLDS1.1011]
ATGGCCAGAGCTAGAACCCAGTATAAGTGCCGGTCTTGCGGCTACATCTCCGCTTCTTACCTGGGCCGGTGCCCGAACTG
CGGGGCCTGGAACCAGTTTGAAAAAGAAAGCCAGGAGGTCCGCCAGACTTCTACTAAAGCTACCCCCAGCCGCCTGATGG
CCAGCGTGGGTGCTAAAGAAGCCGTTAAAATGTCCACCGTCAAGGCGGAAAAAGAAGAGCGGGTCTTAACCAAGTCCTCT
GAACTTAACCGGGTCTTAGGCGGCGGGATCGTACCAGGCTCTTTGGTCTTGATTGGCGGGGACCCCGGCATCGGCAAGTC
CACTTTGATGCTGCAGATCATGAGCGAACTGGCCGAAAAATACAAGGTCCTCTACGTCTCCGGGGAAGAATCTGCCAGCC
AGATCAAGCTACGGGCTGACCGCTTAGGCCTGGGCCAAAGCCCCATGCTTTTATACCCGGAAAGCAACATGGAACACATC
CGCGACCAGATCGACGACGTTAAGCCAGATTTTGTCGTGATCGACTCCATCCAGACCATGAATGAACCCAGCCTGGACTC
CATGGTGGGCTCAGCTTCCCAGGTCCGGGAAGTTACCGCCGAATTGATGAAGATCGCCAAGCTGGACCAGGTCACTGTCT
TTGTCATCGGCCACGTGACCAAGGAAGGGTCCATCGCCGGGCCGAAAATCCTGGAGCACATGGTTGACACCGTCCTTTAC
TTTGAAGGTGACGAGCACCATGCCTACCGGATCCTGCATTCAGTCAAGAACCGTTTTGGGGCGGCCAACGAAATAGGCAT
GTTTGAAATGAAGACCGAAGGCCTGGCAGAAGTGACCAATCCTTCCGCTGTCTTCTTAGATGAACGCTTGCCCGACTCAA
CTGGGTCAGCCGTGGTAGTTTCTTTAGAAGGCACCCGGCCGATCTTGGGCGAAATCCAGGCCCTGGTCACCCCAACCGCC
TTCGGCTATGCCAAGCGGACTACTTCGGGCCTGGACTACAACCGGGTCTCCCTGCTTTTAGCCGTTTTGGAAAAAAGGGG
GAACCTAATGTTGCAGAACCAGGACGCCTATTTATCAGCGACCGGCGGCATCCGCTTAAACGAACCGGCCATTGACCTGG
CCATCGCCATGGCCATTGCCTCCAGTTACTATGACAAGGAAATCTCCGCGACTGACTGCTTTGTCGGGGAAATCGGCCTG
ACTGGGGAAGTCCGCCGGGTCAACCAGATCCAGGCCCGGGTCAAGGAAGCCGGCAAGGTTGGCTTCAAGCGGATTTTTAT
CCCGAAATACAATATGAGCCCGGCCTTGCAGGATTTGGGGATTGAGGTAATTCCGGTCTCCAGCGTCCGCCAGGCCCTCC
ACTACCTTTTCTCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1G8W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

56.332

100

0.563
  radA Streptococcus mitis NCTC 12261

56.332

100

0.563
  radA Streptococcus pneumoniae Rx1

56.332

100

0.563
  radA Streptococcus pneumoniae D39

56.332

100

0.563
  radA Streptococcus pneumoniae R6

56.332

100

0.563
  radA Streptococcus pneumoniae TIGR4

56.332

100

0.563
  radA Bacillus subtilis subsp. subtilis str. 168

55.604

99.345

0.552

Multiple sequence alignment