Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C8250_RS31130 Genome accession   NZ_CP048835
Coordinates   6956986..6957756 (-) Length   256 a.a.
NCBI ID   WP_138357304.1    Uniprot ID   A0ABW8C8Q6
Organism   Streptomyces sp. So13.3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6951986..6962756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS31115 (C8250_031130) - 6952983..6953480 (+) 498 WP_138357307.1 FHA domain-containing protein -
  C8250_RS31120 (C8250_031135) - 6953458..6954714 (-) 1257 WP_138357306.1 serine/threonine-protein kinase -
  C8250_RS31125 (C8250_031140) - 6954818..6956893 (+) 2076 WP_138357305.1 ATP-dependent DNA helicase -
  C8250_RS31130 (C8250_031145) dinR/lexA 6956986..6957756 (-) 771 WP_138357304.1 transcriptional repressor LexA Regulator
  C8250_RS31135 (C8250_031150) nrdR 6958318..6958830 (+) 513 WP_138357303.1 transcriptional regulator NrdR -
  C8250_RS31140 (C8250_031155) - 6958964..6961861 (+) 2898 WP_138357302.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27815.51 Da        Isoelectric Point: 6.9964

>NTDB_id=370937 C8250_RS31130 WP_138357304.1 6956986..6957756(-) (dinR/lexA) [Streptomyces sp. So13.3]
MTTTADTAALTAQDRSQDRLSPMDAMNDETPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREIGQ
AVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDATHSQPTDTTGKPSASYVPLVGRIAAGGPILAEESVEDVFP
LPRQLVGDGELFVLKVVGDSMIEAAIVDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYQPIPG
DEATILGKVVAVLRRV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=370937 C8250_RS31130 WP_138357304.1 6956986..6957756(-) (dinR/lexA) [Streptomyces sp. So13.3]
GTGACCACCACCGCAGACACCGCAGCATTGACCGCCCAGGACCGCTCCCAGGATCGGCTCAGCCCGATGGATGCGATGAA
CGACGAAACGCCCAAGCCCACCCGCTCGCTCCCCGGCCGGCCGCCCGGGATCCGCGCGGACAGCTCCGGCCTCACCGACC
GTCAGCGCCGGGTCATCGAAGTGATCCGCGATTCGGTCCAGCGCCGTGGCTACCCGCCGTCCATGCGCGAGATCGGCCAG
GCCGTCGGTCTGTCCAGCACCTCCTCGGTCGCCCACCAGCTGATGGCGCTGGAGCGCAAGGGATTCCTGCGCCGCGACCC
GCACCGCCCGCGCGCCTACGAGGTCCGCGGCTCCGACGCCACGCACTCGCAGCCGACGGACACCACCGGCAAGCCCTCCG
CGTCGTACGTGCCGCTCGTCGGCCGGATCGCCGCCGGCGGTCCGATCCTCGCCGAGGAATCGGTCGAGGACGTCTTCCCG
CTTCCCCGCCAGCTGGTGGGTGACGGCGAGCTGTTCGTCCTCAAGGTGGTCGGCGACTCGATGATCGAGGCCGCCATCGT
CGACGGGGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTCGCCGCCATGCTCGACGGCGAGG
CGACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAATGCCGCTTACCAGCCCATCCCCGGT
GACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(138-250)

LexA DNA binding domain (LexA_DNA_bind)

(49-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

82.813

0.383