Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C8250_RS21950 Genome accession   NZ_CP048835
Coordinates   4879500..4879730 (+) Length   76 a.a.
NCBI ID   WP_138359511.1    Uniprot ID   A0ABW8CCR2
Organism   Streptomyces sp. So13.3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4874500..4884730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS21930 (C8250_021945) - 4875369..4876337 (-) 969 WP_244809276.1 OB-fold domain-containing protein -
  C8250_RS21935 (C8250_021950) - 4876334..4877530 (-) 1197 WP_138359161.1 acyl-CoA dehydrogenase family protein -
  C8250_RS21940 (C8250_021955) - 4877763..4878071 (-) 309 WP_138359143.1 hypothetical protein -
  C8250_RS21945 (C8250_021960) - 4878627..4879334 (+) 708 WP_187144940.1 bifunctional DNA primase/polymerase -
  C8250_RS21950 (C8250_021965) dinR/lexA 4879500..4879730 (+) 231 WP_138359511.1 hypothetical protein Regulator
  C8250_RS21960 (C8250_021975) - 4880077..4880619 (+) 543 WP_138359513.1 hypothetical protein -
  C8250_RS21965 (C8250_021980) - 4880784..4881833 (+) 1050 WP_138359517.1 histidine kinase -
  C8250_RS21970 (C8250_021985) - 4881826..4882491 (+) 666 WP_138359515.1 response regulator transcription factor -
  C8250_RS21975 (C8250_021990) - 4882567..4884342 (-) 1776 WP_244809278.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8566.81 Da        Isoelectric Point: 9.9772

>NTDB_id=370905 C8250_RS21950 WP_138359511.1 4879500..4879730(+) (dinR/lexA) [Streptomyces sp. So13.3]
MSADGPRYLTDRQEQIAKVIVEWTDLYGYPPTVREIGAAVGLRSPATVAHHLQIMESKGVLSRVPGRHRSYQVHRL

Nucleotide


Download         Length: 231 bp        

>NTDB_id=370905 C8250_RS21950 WP_138359511.1 4879500..4879730(+) (dinR/lexA) [Streptomyces sp. So13.3]
ATGAGCGCGGACGGGCCCCGGTACCTGACCGATCGCCAGGAGCAGATCGCGAAGGTCATCGTCGAGTGGACGGACCTCTA
CGGCTATCCGCCGACCGTCCGGGAGATCGGCGCGGCCGTCGGCCTGCGCAGCCCCGCGACGGTCGCCCACCATCTGCAGA
TCATGGAGAGCAAGGGCGTCCTCTCCCGCGTCCCGGGCCGCCACCGCTCCTACCAGGTGCACCGGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(8-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.615

85.526

0.382