Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   C8250_RS19685 Genome accession   NZ_CP048835
Coordinates   4382878..4383873 (-) Length   331 a.a.
NCBI ID   WP_138354754.1    Uniprot ID   A0ABW8CDS9
Organism   Streptomyces sp. So13.3     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4377878..4388873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS19665 (C8250_019690) - 4377899..4378693 (-) 795 WP_138354751.1 VIT family protein -
  C8250_RS19670 (C8250_019695) - 4378730..4380790 (-) 2061 WP_138354752.1 fructose-specific PTS transporter subunit EIIC -
  C8250_RS19675 (C8250_019700) pfkB 4380936..4381880 (-) 945 WP_138354753.1 1-phosphofructokinase -
  C8250_RS19680 (C8250_019705) - 4381877..4382638 (-) 762 WP_138354773.1 DeoR/GlpR family DNA-binding transcription regulator -
  C8250_RS19685 (C8250_019710) rpoS 4382878..4383873 (-) 996 WP_138354754.1 sigma-70 family RNA polymerase sigma factor Regulator
  C8250_RS19690 (C8250_019715) - 4384388..4385557 (+) 1170 WP_138354755.1 questin oxidase family protein -
  C8250_RS19695 (C8250_019720) - 4385696..4386319 (+) 624 WP_164294369.1 hypothetical protein -
  C8250_RS19700 (C8250_019725) - 4386482..4388008 (-) 1527 WP_138354757.1 MFS transporter -
  C8250_RS19705 (C8250_019730) - 4388066..4388710 (-) 645 WP_138354758.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36868.38 Da        Isoelectric Point: 4.9095

>NTDB_id=370901 C8250_RS19685 WP_138354754.1 4382878..4383873(-) (rpoS) [Streptomyces sp. So13.3]
MATRAVARRSAGGSSSVRAVGGEAADRDLVGMYLDEIARTPLLDAAQEVELSREIEAGVYAERILSGDSQLVEGAGAGAD
REELEALVAIGDRAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITR
SIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDSTPSRVHDVLDWARDPVSLNMSVDADGETEFGD
LVEDGAAASPEQSVLVMLRREELEELIGRLDERTASIIRSRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALADLKRM
ARDTGLEYEAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=370901 C8250_RS19685 WP_138354754.1 4382878..4383873(-) (rpoS) [Streptomyces sp. So13.3]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCCGCAGGCGGGAGCAGCAGCGTCCGCGCCGTTGGCGGGGAAGCCGCAGACCG
CGACCTCGTCGGTATGTACCTCGACGAGATCGCTCGTACGCCGCTGCTCGACGCTGCGCAGGAAGTCGAACTGTCCCGGG
AGATCGAGGCCGGCGTCTACGCCGAGCGCATACTCTCCGGTGACTCCCAGCTCGTCGAAGGTGCCGGGGCTGGTGCCGAT
CGCGAGGAGCTGGAGGCGCTGGTCGCCATCGGCGACCGCGCCAAGGACGTCTTCATCCGCTCCAATCTGCGCCTCGTCGT
AGCGGTCGCCCGCCGCTACCCGCGCAGCGGTCTTCCGCTGCTCGACCTCATCCAGGAGGGGAACGCGGGCCTGGTGCGCG
CCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCCATCACGCGC
TCCATCGCCGACCAGTCCCGCACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGTGTGCAGCG
GGAGTTCAACCGTGAGCACGGGCGCGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACTCGACGCCGTCCCGCGTGC
ATGACGTGCTCGACTGGGCCCGTGACCCGGTCAGCCTGAACATGTCCGTGGACGCGGACGGCGAGACCGAGTTCGGGGAT
CTCGTGGAGGACGGCGCCGCCGCCTCTCCCGAGCAGTCCGTCCTCGTCATGCTGCGCCGAGAGGAGCTCGAAGAGCTCAT
CGGCCGACTCGACGAACGCACGGCTTCGATCATCCGGTCCCGGTACGGTATCGAGGACGGCCGCGAGCGGACGCTGACCG
AGGTCGGCAAGCAGCACGGCCTGACGCGTGAGCGCATCCGGCAGATCGAGAAGCACGCCCTGGCAGACCTCAAGCGCATG
GCCCGCGACACGGGCCTGGAGTACGAGGCCGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(28-61)

Sigma-70, region 4 (Sigma70_r4)

(267-318)

Sigma-70 region 2 (Sigma70_r2)

(98-167)

Sigma-70 region 3 (Sigma70_r3)

(177-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.688

96.677

0.384

Multiple sequence alignment