Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C8250_RS16310 Genome accession   NZ_CP048835
Coordinates   3600255..3601988 (-) Length   577 a.a.
NCBI ID   WP_138356747.1    Uniprot ID   -
Organism   Streptomyces sp. So13.3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3595255..3606988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS16285 (C8250_016310) - 3595458..3595886 (-) 429 WP_138356750.1 organic hydroperoxide resistance protein -
  C8250_RS16290 (C8250_016315) - 3595967..3596983 (-) 1017 WP_138356795.1 NADP-dependent oxidoreductase -
  C8250_RS16295 (C8250_016320) - 3597088..3597516 (+) 429 WP_138356749.1 MarR family transcriptional regulator -
  C8250_RS16300 (C8250_016325) - 3597571..3598074 (+) 504 WP_164294036.1 hypothetical protein -
  C8250_RS16305 (C8250_016330) rcrQ 3598294..3600213 (-) 1920 WP_138356794.1 ABC transporter ATP-binding protein Regulator
  C8250_RS16310 (C8250_016335) rcrP 3600255..3601988 (-) 1734 WP_138356747.1 ABC transporter ATP-binding protein Regulator
  C8250_RS16315 (C8250_016340) - 3602058..3603515 (-) 1458 WP_138356746.1 FGGY family carbohydrate kinase -
  C8250_RS16320 (C8250_016345) - 3603543..3603839 (-) 297 WP_138356745.1 YtxH domain-containing protein -
  C8250_RS16340 (C8250_016365) - 3605208..3605441 (+) 234 WP_138356793.1 type II toxin-antitoxin system VapB family antitoxin -
  C8250_RS16345 (C8250_016370) - 3605438..3605845 (+) 408 WP_138356744.1 PIN domain nuclease -
  C8250_RS16350 (C8250_016375) - 3605919..3606920 (-) 1002 Protein_3308 ATP-dependent helicase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62364.87 Da        Isoelectric Point: 6.2724

>NTDB_id=370891 C8250_RS16310 WP_138356747.1 3600255..3601988(-) (rcrP) [Streptomyces sp. So13.3]
MLIRILRTHLRPYQRPITLLVLLQLVQTIATLYLPTLNADIIDNGVVKGDTGYILRLGGIMIAVTVLQVVCAVGAVFFGA
RTAMAVGRDIRASIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSSL
LLAVVPVLGILIGLIVRRMRPLFRTMQVRVDTVNRVLREQITGIRVIRAFVKDDYEKKRFAGANDELTDVSLQTGRLMAL
MFPVVMTVVNVSSVAVMWFGAHRIASGGMQIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PVAPITKLLRHGHLELRGADFSYPGAEAAVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLYDATGGDVLVDGASVR
DLAPALLAETVGLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQARGFVEELEGGLDAPIAQGGTNVSGGQRQRL
AIARVLVRRPEIYLFDDSFSALDYATDAALRSALGRETAEATVVIVAQRVSTIRDADRIIVLDEGQVVGTGTHSELMSEN
PTYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=370891 C8250_RS16310 WP_138356747.1 3600255..3601988(-) (rcrP) [Streptomyces sp. So13.3]
GTGCTGATCCGAATTCTGCGCACCCACCTGCGCCCGTACCAGCGACCCATCACGCTGCTCGTGCTGCTCCAGCTCGTGCA
GACCATCGCCACGCTGTACCTCCCCACGCTCAACGCCGACATCATTGACAACGGTGTCGTCAAGGGCGACACCGGATACA
TCCTGCGGCTCGGCGGCATCATGATCGCGGTCACCGTGCTCCAGGTGGTGTGCGCGGTCGGCGCCGTGTTCTTCGGCGCC
AGGACGGCCATGGCCGTCGGCCGGGACATCCGGGCCTCGATCTTCGACCGGGTGCAGAGCTTCTCCGCCCGCGAGGTGGG
GCAGTTCGGCGCCCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTACCGCTGTCCTCGCTG
CTGCTGGCCGTGGTGCCGGTGCTCGGCATCCTCATCGGGCTGATCGTCCGCCGGATGCGGCCGCTGTTCCGCACCATGCA
GGTGCGCGTCGACACGGTGAACCGTGTACTGCGTGAGCAGATCACCGGCATCCGGGTGATCCGGGCGTTCGTGAAGGACG
ACTACGAGAAGAAGCGCTTCGCCGGCGCGAACGACGAGCTGACGGACGTGTCGCTGCAGACCGGCCGGCTGATGGCACTG
ATGTTCCCCGTCGTCATGACGGTCGTGAACGTCTCCAGCGTCGCGGTGATGTGGTTCGGCGCACACCGGATCGCGAGCGG
CGGCATGCAGATCGGCGCGCTGACCGCGTTCCTCAGCTATCTGATGCAGATCCTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCGGAGCGCATCGAGGAGGTCCTGGCGACCGAGTCGAGCGTCGTTCCG
CCGGTCGCACCCATCACGAAGCTGCTCCGGCACGGCCATCTGGAGCTGCGCGGCGCGGACTTCAGCTATCCGGGTGCCGA
GGCGGCGGTGTTGCGCGGGGTCGACCTGGTCGCCAGACCGGGGGAGACCACCGCGGTGATCGGGTCGACGGGCAGCGGCA
AGAGCACCCTGCTGGGGCTCGTCCCACGGCTCTACGACGCGACCGGCGGCGACGTGCTCGTCGACGGGGCCTCCGTCCGG
GACCTGGCCCCCGCGCTGCTCGCCGAGACCGTCGGCCTCGTACCGCAGAAGCCGTACCTGTTCTCCGGGACCGTCGCGAC
CAACCTGCGCTACGGCAAGCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCCGCGGCTTCG
TGGAGGAACTCGAAGGCGGCCTGGACGCCCCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGGTGCTGGTGCGCCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCCCTGCGCTCGGCGCTCGGCCGGGAGACCGCCGAGGCCACCGTGGTGATCGTCGCGCAGCGGGTGAGCACCATCC
GGGACGCCGACCGCATCATCGTCCTCGACGAGGGCCAGGTGGTGGGCACCGGAACGCACAGCGAACTCATGTCGGAGAAC
CCGACCTACCGGGAGATCGTGCTCTCCCAGCTCACTGAGCAGGAGGCAGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.259

95.147

0.402