Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C8250_RS16305 Genome accession   NZ_CP048835
Coordinates   3598294..3600213 (-) Length   639 a.a.
NCBI ID   WP_138356794.1    Uniprot ID   -
Organism   Streptomyces sp. So13.3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3593294..3605213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS16280 (C8250_016305) - 3594833..3595405 (+) 573 WP_138356751.1 TetR/AcrR family transcriptional regulator -
  C8250_RS16285 (C8250_016310) - 3595458..3595886 (-) 429 WP_138356750.1 organic hydroperoxide resistance protein -
  C8250_RS16290 (C8250_016315) - 3595967..3596983 (-) 1017 WP_138356795.1 NADP-dependent oxidoreductase -
  C8250_RS16295 (C8250_016320) - 3597088..3597516 (+) 429 WP_138356749.1 MarR family transcriptional regulator -
  C8250_RS16300 (C8250_016325) - 3597571..3598074 (+) 504 WP_164294036.1 hypothetical protein -
  C8250_RS16305 (C8250_016330) rcrQ 3598294..3600213 (-) 1920 WP_138356794.1 ABC transporter ATP-binding protein Regulator
  C8250_RS16310 (C8250_016335) rcrP 3600255..3601988 (-) 1734 WP_138356747.1 ABC transporter ATP-binding protein Regulator
  C8250_RS16315 (C8250_016340) - 3602058..3603515 (-) 1458 WP_138356746.1 FGGY family carbohydrate kinase -
  C8250_RS16320 (C8250_016345) - 3603543..3603839 (-) 297 WP_138356745.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 68976.26 Da        Isoelectric Point: 5.0179

>NTDB_id=370890 C8250_RS16305 WP_138356794.1 3598294..3600213(-) (rcrQ) [Streptomyces sp. So13.3]
MAGPARFMGGGPVERSMDFKGSFRRLIRLMRPDRLFLYLVLALGTASVTLSVLGPKILGHATDLIFAGVIGGQFKAGTTK
AQAIEAMRQHGEGQVADLLSAVDFTPGQGIDFEAVGSVLLTVLGIYLAAGLFSLVQMRTATGIIQRTVYRLREDIEAKLS
RLPLSYFDQQPRGEVLSRATNDIDNIAQTLQQTMGQIVNSLLTIVGVLVMMFWISPLLALVALVTVPVSVVVATAVGKRA
QPQFVQQWKTTGKLNAHIEEMYTGHSLVKVFGRQDESAEAFRVQNEMLYRTGFKAQFISGIIQPAMMFIGNINYVLVAVV
GGLRVATGALSIGDVQAFIQYSRQFSQPLTQVASMSNLVQSGVASAERVFELLDAPEQDADPANAARPRELLGRVALEGV
AFRYEPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTAGRITLDGVDIAEMSREDLRSGIGMVLQDTWL
FGGTIAENIAYGSEGRTQEQIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEATS
SVDTRTEVLIQRAMATLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGTHSELLAAEGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=370890 C8250_RS16305 WP_138356794.1 3598294..3600213(-) (rcrQ) [Streptomyces sp. So13.3]
ATGGCCGGGCCCGCGCGCTTCATGGGCGGCGGGCCGGTCGAGCGGTCGATGGACTTCAAGGGCTCGTTCCGGCGGCTGAT
CCGTCTGATGCGTCCGGACCGGCTCTTCCTCTACCTGGTGCTGGCGCTGGGCACCGCGAGCGTGACGCTCTCCGTGCTGG
GCCCCAAGATCCTCGGCCACGCCACCGACCTGATCTTCGCGGGCGTGATCGGCGGTCAGTTCAAGGCCGGCACCACCAAG
GCGCAGGCGATCGAGGCCATGCGCCAGCACGGCGAGGGCCAGGTCGCCGATCTGCTCTCCGCGGTGGACTTCACCCCCGG
CCAGGGCATCGACTTCGAGGCGGTGGGCAGCGTGCTGCTGACCGTCCTGGGGATCTACCTGGCCGCCGGGCTGTTCAGCC
TCGTACAGATGCGGACCGCCACCGGCATCATCCAGCGCACCGTCTACCGGCTGCGCGAGGACATCGAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGCCGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGC
GCAGACCCTGCAGCAGACCATGGGCCAGATCGTGAACTCGCTGCTCACGATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTGCCGGTGTCGGTGGTCGTGGCCACCGCGGTCGGCAAGCGCGCG
CAGCCGCAGTTCGTCCAGCAGTGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACTCGCT
GGTGAAGGTCTTCGGGCGGCAGGACGAGTCCGCCGAGGCCTTCAGGGTGCAGAACGAGATGCTCTACCGGACGGGCTTCA
AGGCGCAGTTCATCAGCGGGATCATCCAGCCCGCGATGATGTTCATCGGGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGGCTGCGGGTCGCGACCGGCGCGCTGTCCATCGGCGACGTCCAGGCGTTCATCCAGTACTCCCGGCAGTTCAGCCA
GCCGCTCACCCAGGTGGCGAGCATGTCCAACCTGGTGCAGTCCGGGGTCGCTTCGGCCGAGCGGGTCTTCGAGCTGCTGG
ACGCCCCCGAGCAGGACGCGGACCCGGCGAACGCCGCCCGGCCCAGGGAACTGCTCGGCCGCGTCGCCCTGGAAGGGGTG
GCGTTCCGGTACGAGCCGGACAAGCCGCTGATCGAGGACCTGTCGCTGAGCGTCGAGCCCGGCCACACCGTCGCGATCGT
CGGTCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGCGGGCCGGATCACCC
TGGACGGCGTGGACATCGCCGAGATGTCCCGCGAGGACCTGCGCTCCGGCATCGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCTCCGAGGGCCGTACCCAGGAGCAGATCGAGGAGGCGGCGCGCGC
GGCGCACGCCGACCGCTTCATCCGCACCCTCCCGGACGGCTACGACACGGTGATCGACGACGAGGGCTCGGGGGTCAGCG
CGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTCGTCCTCGACGAGGCGACCAGC
TCCGTCGACACCCGTACCGAGGTGCTGATCCAGCGCGCCATGGCGACCCTGGCGCACGGCAGGACCAGCTTCGTCATCGC
CCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGTCCGGCGCGATCGTCGAGCAGGGCACGCACA
GTGAACTGCTGGCCGCCGAGGGTGCCTACGCACGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCGGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-560)

ABC transporter transmembrane region (ABC_membrane)

(56-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.161

82.473

0.372