Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QE11421_RS20410 Genome accession   NZ_CP048821
Coordinates   4171397..4172002 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain QEC11-421     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4166397..4177002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE11421_RS20380 (QE11421_19715) rsmS 4167102..4167263 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  QE11421_RS20385 (QE11421_19720) priC 4167277..4167804 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  QE11421_RS20390 (QE11421_19725) ybaN 4167874..4168251 (+) 378 WP_001188905.1 DUF454 family protein -
  QE11421_RS20395 (QE11421_19730) apt 4168404..4168955 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QE11421_RS20400 (QE11421_19735) dnaX 4169084..4171015 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QE11421_RS20405 (QE11421_19740) ybaB 4171068..4171397 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QE11421_RS20410 (QE11421_19745) recR 4171397..4172002 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QE11421_RS20415 (QE11421_19750) htpG 4172112..4173986 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  QE11421_RS20420 (QE11421_19755) adk 4174167..4174811 (+) 645 WP_001220233.1 adenylate kinase -
  QE11421_RS20425 (QE11421_19760) hemH 4175047..4176009 (+) 963 WP_001250088.1 ferrochelatase -
  QE11421_RS20430 (QE11421_19765) aes 4176006..4176965 (-) 960 WP_000801850.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=370787 QE11421_RS20410 WP_001195025.1 4171397..4172002(+) (recR) [Escherichia coli strain QEC11-421]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=370787 QE11421_RS20410 WP_001195025.1 4171397..4172002(+) (recR) [Escherichia coli strain QEC11-421]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment