Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BC1002_RS01615 Genome accession   NC_014117
Coordinates   344669..346186 (-) Length   505 a.a.
NCBI ID   WP_013088327.1    Uniprot ID   D5WB99
Organism   Paraburkholderia atlantica     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339669..351186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC1002_RS01590 (BC1002_0316) - 340568..341203 (-) 636 WP_013088324.1 LON peptidase substrate-binding domain-containing protein -
  BC1002_RS01595 (BC1002_0317) rapZ 341243..342136 (-) 894 WP_041734268.1 RNase adapter RapZ -
  BC1002_RS01600 (BC1002_0318) hprK 342235..343203 (-) 969 WP_008921706.1 HPr(Ser) kinase/phosphatase -
  BC1002_RS01605 (BC1002_0319) - 343284..343799 (-) 516 WP_013088326.1 PTS sugar transporter subunit IIA -
  BC1002_RS01610 (BC1002_0320) hpf 344142..344498 (-) 357 WP_008921708.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BC1002_RS01615 (BC1002_0321) rpoN/rpoN1 344669..346186 (-) 1518 WP_013088327.1 RNA polymerase factor sigma-54 Machinery gene
  BC1002_RS01620 (BC1002_0322) lptB 346376..347152 (-) 777 WP_085951680.1 LPS export ABC transporter ATP-binding protein -
  BC1002_RS01625 (BC1002_0323) lptA 347170..347841 (-) 672 WP_013088329.1 lipopolysaccharide transport periplasmic protein LptA -
  BC1002_RS01630 (BC1002_0324) lptC 347881..348468 (-) 588 WP_013088330.1 LPS export ABC transporter periplasmic protein LptC -
  BC1002_RS01635 (BC1002_0325) - 348465..349025 (-) 561 WP_013088331.1 KdsC family phosphatase -
  BC1002_RS01640 (BC1002_0326) kdsD 349025..350008 (-) 984 WP_013088332.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55319.44 Da        Isoelectric Point: 4.9449

>NTDB_id=37076 BC1002_RS01615 WP_013088327.1 344669..346186(-) (rpoN/rpoN1) [Paraburkholderia atlantica]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDEWIASPLRVAADGSVIAQTPGSSAPADPM
AGNGSTSSEGNGERAESGEPQGVDEYNGLSGDGGGDTSQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVT
QASQRDRALITFLIESLDDDGYLAATLEEVLADLPEELEVDVDELNAALALLHSFDPPGVGARSASECLKLQLLRLEPSP
TRTLALDIVGRYLELLAARDFTRLRKHLKASDDDLRDAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=37076 BC1002_RS01615 WP_013088327.1 344669..346186(-) (rpoN/rpoN1) [Paraburkholderia atlantica]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACGCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCCATGGCGATCTCGCAGAATCCACTCCTCGAAAACGAAGACGAGTGGA
TCGCGAGCCCATTGCGGGTTGCGGCCGACGGTTCCGTGATCGCCCAGACGCCGGGCTCCTCGGCGCCGGCCGATCCGATG
GCCGGCAACGGTTCGACGTCGTCCGAAGGCAACGGCGAGCGCGCCGAAAGCGGCGAACCGCAGGGTGTCGATGAATACAA
CGGCCTTTCGGGCGACGGCGGCGGCGACACGTCGCAGTGGAACCTCGACGACTACGGCCGCTCCGGCAACGCGTCGGACG
ACGACGACCTGCCCCCGCTGCAAATCCACGAATCGAGCACGTCTCTTCGCGACCACCTGATGGCGCAACTACGTGTCACC
CAGGCGAGCCAGCGCGACCGCGCGCTCATCACATTCCTGATCGAATCTCTGGACGACGACGGCTATCTCGCCGCCACGCT
CGAAGAAGTGCTGGCCGACTTGCCCGAAGAACTCGAAGTCGATGTCGACGAACTGAACGCCGCGCTTGCGCTGCTGCATA
GCTTCGACCCGCCCGGTGTCGGCGCGCGCTCCGCGTCCGAATGTCTGAAGCTGCAGTTGCTGCGGCTCGAGCCGTCGCCC
ACGCGCACGCTTGCGCTAGACATTGTCGGCCGTTACCTGGAGTTGCTCGCCGCGCGCGATTTCACGCGGCTGCGCAAGCA
CCTGAAAGCCAGCGACGACGATCTGCGCGACGCGCATGCGCTGATCCGCTCGCTCGAACCATTTCCGGGCGCCGCCTACG
GCAAGGCCGAAGCGGACTACGTTGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGCTGGCAGGCGGAGCTGAATCCC
GAGGTAGTTCCGAAGCTGCGGATTAACCATCTGTACGCGAATATTCTGCGCAACAACCGCGGCGATCCGGGCAGTGGTTC
GTTGCGGCAGCAACTGCAGGAAGCTCGGTGGCTGATCAAAAATATCCAGCAGCGTTTCGAGACGATCCTGCGAGTTGCGC
AGGCAATTGTCGAGCGTCAAAAGAGCTTTTTTGTGCATGGCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCT
GATACGCTGGGCCTACACGAGTCGACTGTCTCGCGTGTGACAACCGGTAAATACATGCTGACCCCTTTCGGGACGCTGGA
ATTCAAGTACTTTTTCGGCTCACATGTTTCGACGGACACCGGCGGCGCGGCCTCCTCCACGGCCATTCGCGCGCTGATCA
AACAACTGATAGGAGCGGAAAACCCGAAATCGCCACTTTCAGACAGTCGCATAGCCGAACTGCTGGCGGAACAGGGCTTC
GTGGTCGCACGACGTACCGTTGCGAAATACCGTGAGGCGCTCAAAATCCCGGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5WB99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.191

100

0.677

Multiple sequence alignment