Detailed information NTG0037075

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BC1002_RS01510
• Genome accession: NC_014117
• Coordinates: 326140..327294 (-)
• Length: 384 a.a.
• NCBI ID: WP_013088309.1
• Uniprot ID: D5WB78
• Organism: Paraburkholderia atlantica
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 321140..332294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BC1002_RS01485 (BC1002_0295)	-	321513..321896 (+)	384	WP_013088304.1	nuclear transport factor 2 family protein	-
BC1002_RS01490 (BC1002_0296)	-	322094..323080 (-)	987	Protein_290	2-isopropylmalate synthase	-
BC1002_RS01495 (BC1002_0297)	ybiB	323458..324429 (-)	972	WP_193373032.1	DNA-binding protein YbiB	-
BC1002_RS01500 (BC1002_0298)	-	324652..325350 (+)	699	WP_013088307.1	fumarylacetoacetate hydrolase family protein	-
BC1002_RS01505 (BC1002_0299)	maiA	325385..326029 (+)	645	WP_013088308.1	maleylacetoacetate isomerase	-
BC1002_RS01510 (BC1002_0300)	pilA	326140..327294 (-)	1155	WP_013088309.1	signal recognition particle-docking protein FtsY	Machinery gene
BC1002_RS01515 (BC1002_0301)	rsmD	327546..328160 (+)	615	WP_013088310.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BC1002_RS01520 (BC1002_0302)	coaD	328261..328770 (+)	510	WP_013088311.1	pantetheine-phosphate adenylyltransferase	-
BC1002_RS01525 (BC1002_0303)	-	328828..329175 (-)	348	WP_013088312.1	transcriptional regulator	-
BC1002_RS01530 (BC1002_0305)	-	330158..330787 (+)	630	WP_013088314.1	hypothetical protein	-
BC1002_RS01535 (BC1002_0306)	-	330890..331147 (+)	258	WP_013088315.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40800.70 Da
• Isoelectric Point: 4.7476

>NTDB_id=37075 BC1002_RS01510 WP_013088309.1 326140..327294(-) (pilA) [Paraburkholderia atlantica]
MFSFFKRFKGSKESDTAADESLAAQDGATPEAEAVEPVAPAEPVAPAAPSVPPVATTIIEPQPEPQDTALDSVEIVPPPV
QDAGAKRSWLTRLKSGLAKTSSNLTGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLREKVRSERLTDPQQVKTA
LRTLLVELLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFHQSVLLAAGDTFRAAAREQLAVWGQRNNVT
VVAQESGDPAAVIFDAVGAARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALTQV
KAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVDDLQPFSAEEFSDALLGG

Nucleotide

• Length: 1155 bp

>NTDB_id=37075 BC1002_RS01510 WP_013088309.1 326140..327294(-) (pilA) [Paraburkholderia atlantica]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATACCGCCGCAGACGAATCGCTGGCGGCGCAAGACGG
CGCGACGCCCGAGGCCGAGGCCGTCGAGCCGGTTGCGCCCGCCGAACCCGTCGCGCCTGCCGCGCCCTCCGTTCCCCCTG
TGGCCACGACCATCATCGAGCCGCAGCCCGAGCCGCAAGACACCGCGCTCGACAGCGTCGAAATCGTTCCGCCGCCCGTG
CAGGACGCCGGCGCGAAGCGCTCGTGGCTCACACGCCTGAAGAGCGGCCTGGCGAAAACCAGTTCGAACCTGACCGGCAT
TTTCGTCGGCACGAAGATCGACGAGGACCTGTACGAGGAACTCGAAACCGCGCTGCTGATGTCGGACGCCGGCGTCGAGG
CGACCGAATTCCTGCTCGAATCGCTGCGCGAGAAAGTGCGCAGCGAACGCCTGACGGACCCCCAGCAGGTGAAGACCGCG
CTGCGCACGCTGCTCGTCGAGTTGCTGAAGCCGCTCGAAAAATCGTTGATGCTCGGCCGCGCGCAGCCGCTCGTGATGAT
GATCGCCGGCGTCAACGGCGCGGGCAAAACCACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTTCACCAGTCGG
TGCTGCTCGCCGCCGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAGCTCGCCGTCTGGGGCCAGCGCAACAACGTGACC
GTGGTCGCGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCGGCGCCGCACGCGCGCGCAACATCGACGT
GATGATGGCCGACACGGCCGGCCGCCTGCCCACGCAGCTGCATCTGATGGAAGAGCTGCGCAAAGTGAAGCGCGTGATCG
GCAAGGCGCAGGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGATGCCAACACGGGACAGAACGCGCTTACGCAGGTC
AAGGCGTTCGACGACGCGCTCGGCCTCACCGGTCTGATCGTCACCAAGCTCGACGGCACGGCGAAGGGCGGCATTCTCGC
GGCGATCGCGCGGCAGCGCCCGATTCCGGTGTATTTCATCGGCGTCGGCGAAAAGGTCGACGATCTGCAGCCGTTCAGCG
CAGAGGAGTTTTCGGACGCGCTGCTGGGCGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (103-162)

• SRP54-type protein, GTPase domain (SRP54) (184-382)

3D structure

• AlphaFold DB: D5WB78

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.349	100	0.581