Detailed information NTG0370739

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QE11421_RS09550
• Genome accession: NZ_CP048821
• Coordinates: 1936677..1937669 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain QEC11-421
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1931677..1942669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QE11421_RS09530 (QE11421_9225)	otnK	1932452..1933714 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
QE11421_RS09535 (QE11421_9230)	ygbL	1933711..1934349 (+)	639	WP_001278994.1	aldolase	-
QE11421_RS09540 (QE11421_9235)	ygbM	1934354..1935130 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QE11421_RS09545 (QE11421_9240)	ygbN	1935219..1936583 (+)	1365	WP_049254918.1	GntP family transporter	-
QE11421_RS09550 (QE11421_9245)	rpoS	1936677..1937669 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QE11421_RS09555 (QE11421_9250)	nlpD	1937732..1938826 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QE11421_RS09560 (QE11421_9255)	pcm	1939011..1939637 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QE11421_RS09565 (QE11421_9260)	surE	1939631..1940392 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QE11421_RS09570 (QE11421_9265)	truD	1940373..1941422 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QE11421_RS09575 (QE11421_9270)	ispF	1941419..1941898 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QE11421_RS09580 (QE11421_9275)	ispD	1941898..1942608 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=370739 QE11421_RS09550 WP_000081550.1 1936677..1937669(-) (rpoS) [Escherichia coli strain QEC11-421]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=370739 QE11421_RS09550 WP_000081550.1 1936677..1937669(-) (rpoS) [Escherichia coli strain QEC11-421]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715