Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FKZ69_RS28155 Genome accession   NZ_CP041236
Coordinates   6028319..6029686 (-) Length   455 a.a.
NCBI ID   WP_024077502.1    Uniprot ID   -
Organism   Pseudomonas azotoformans strain P45A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6023319..6034686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKZ69_RS28130 (FKZ69_28130) yjiA 6023654..6024613 (-) 960 WP_027605317.1 GTPase -
  FKZ69_RS28135 (FKZ69_28135) - 6024750..6024947 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  FKZ69_RS28140 (FKZ69_28140) - 6024963..6027029 (-) 2067 WP_065938308.1 carbon starvation CstA family protein -
  FKZ69_RS28145 (FKZ69_28145) - 6027204..6027572 (+) 369 WP_092488508.1 PilZ domain-containing protein -
  FKZ69_RS28150 (FKZ69_28150) - 6027577..6028302 (-) 726 WP_141607358.1 hypothetical protein -
  FKZ69_RS28155 (FKZ69_28155) radA 6028319..6029686 (-) 1368 WP_024077502.1 DNA repair protein RadA Machinery gene
  FKZ69_RS28160 (FKZ69_28160) - 6029722..6030261 (-) 540 WP_141607359.1 ankyrin repeat domain-containing protein -
  FKZ69_RS28165 (FKZ69_28165) katB 6030316..6031857 (-) 1542 WP_092488506.1 catalase KatB -
  FKZ69_RS28170 (FKZ69_28170) mscL 6032145..6032561 (+) 417 WP_053137928.1 large-conductance mechanosensitive channel protein MscL -
  FKZ69_RS28175 (FKZ69_28175) - 6032608..6033384 (-) 777 WP_092488505.1 ferredoxin--NADP reductase -
  FKZ69_RS28180 (FKZ69_28180) - 6033765..6034475 (+) 711 WP_092488504.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48819.34 Da        Isoelectric Point: 6.8987

>NTDB_id=370731 FKZ69_RS28155 WP_024077502.1 6028319..6029686(-) (radA) [Pseudomonas azotoformans strain P45A]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGASAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=370731 FKZ69_RS28155 WP_024077502.1 6028319..6029686(-) (radA) [Pseudomonas azotoformans strain P45A]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCTACCTTTCCCAAGTGGGCCGGCCAATGCACCGAGTG
TGGTGCGTGGAATACCCTGACTGAAACCATGATCGAAAGCGGCGGCGCCTCGGCCCCCACCGGCCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTTGAAGAGATCCCGCGTTTCTCGACGGCCTCCGGTGAGCTG
GATCGGGTCCTGGGTGGCGGCCTGGTGGATGGTTCGGTGGTGTTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAGGTGG
CCATGCGCGCCCGCCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGGATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAAGAGGGCGCGCTGGCCGGGCCACGGGTGCTGGAGCATATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGCTTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAACTGGGTGTGTTCGC
CATGACCGACCGGGGGCTGAAGGAAGTCTCCAACCCCTCGGCGATTTTCCTGACCCGCGCCCAGGAAGAAGTCCCTGGCA
GCGTGGTCATGGCGACGTGGGAAGGTACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCACGCCGCGTCACGCTGGGCCTGGATCAAAACCGCCTGGCGATGCTGTTGGCGGTGCTGCACCGCCATGGGGGGAT
CCCGACCCATGACCAGGACGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCATTGCCCCACGACCTGCTGGTATTCGGTGAAGTGGGCCTGTCCGGC
GAAGTGCGTCCGGTGCCGAGCGGCCAGGAACGCTTGAAGGAGGCGGCCAAACACGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCACCTGGATTGCAGGTGATTGGGGTCACGCGCCTGGAACAGGCGTTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment