Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QE11421_RS05530 Genome accession   NZ_CP048821
Coordinates   1102010..1103437 (+) Length   475 a.a.
NCBI ID   WP_072692302.1    Uniprot ID   -
Organism   Escherichia coli strain QEC11-421     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097010..1108437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE11421_RS05490 (QE11421_5315) yeeW 1097193..1097387 (+) 195 WP_000988600.1 DUF5983 family protein -
  QE11421_RS05495 - 1097433..1097513 (+) 81 Protein_1087 hypothetical protein -
  QE11421_RS05500 - 1097802..1097948 (-) 147 Protein_1088 transposase domain-containing protein -
  QE11421_RS05505 - 1098002..1098184 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  QE11421_RS05510 (QE11421_5320) tmaR 1098285..1098614 (-) 330 WP_000450409.1 DUF496 family protein -
  QE11421_RS05515 (QE11421_5325) yeeA 1098786..1099844 (-) 1059 WP_062878045.1 FUSC family protein -
  QE11421_RS05520 (QE11421_5330) sbmC 1100043..1100516 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  QE11421_RS05525 (QE11421_5335) dacD 1100635..1101801 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  QE11421_RS05530 (QE11421_5340) sbcB 1102010..1103437 (+) 1428 WP_072692302.1 exodeoxyribonuclease I Machinery gene
  QE11421_RS05535 (QE11421_5345) tsuB 1103480..1103707 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  QE11421_RS05540 (QE11421_5350) tsuA 1103721..1104779 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  QE11421_RS05545 (QE11421_5355) plaP 1104958..1106316 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  QE11421_RS05550 yoeI 1106306..1106368 (-) 63 WP_010723108.1 membrane protein YoeI -
  QE11421_RS05555 (QE11421_5360) yeeY 1106583..1107512 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  QE11421_RS05560 (QE11421_5365) yeeZ 1107558..1108382 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.83 Da        Isoelectric Point: 5.6098

>NTDB_id=370726 QE11421_RS05530 WP_072692302.1 1102010..1103437(+) (sbcB) [Escherichia coli strain QEC11-421]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAKAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=370726 QE11421_RS05530 WP_072692302.1 1102010..1103437(+) (sbcB) [Escherichia coli strain QEC11-421]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGAAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581