Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FKZ68_RS00850 Genome accession   NZ_CP041230
Coordinates   199600..200967 (+) Length   455 a.a.
NCBI ID   WP_004315266.1    Uniprot ID   A0A943J827
Organism   Bacteroides xylanisolvens strain H207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194600..205967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKZ68_RS00825 (FKZ68_00825) - 194839..195876 (+) 1038 WP_008025258.1 asparaginase -
  FKZ68_RS00835 (FKZ68_00835) - 196121..197479 (-) 1359 WP_008022065.1 transposase -
  FKZ68_RS00840 (FKZ68_00840) - 197667..198317 (-) 651 WP_049703552.1 DUF3226 domain-containing protein -
  FKZ68_RS00845 (FKZ68_00845) - 198327..199430 (-) 1104 WP_049703551.1 AAA family ATPase -
  FKZ68_RS00850 (FKZ68_00850) radA 199600..200967 (+) 1368 WP_004315266.1 DNA repair protein RadA Machinery gene
  FKZ68_RS00855 (FKZ68_00855) - 201048..202697 (+) 1650 WP_118407180.1 NAD(P)/FAD-dependent oxidoreductase -
  FKZ68_RS00860 (FKZ68_00860) - 202714..203316 (+) 603 WP_008640722.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50112.72 Da        Isoelectric Point: 5.9344

>NTDB_id=370701 FKZ68_RS00850 WP_004315266.1 199600..200967(+) (radA) [Bacteroides xylanisolvens strain H207]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=370701 FKZ68_RS00850 WP_004315266.1 199600..200967(+) (radA) [Bacteroides xylanisolvens strain H207]
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCAAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAACCTACCAACCGCCGTCCGGTGTCGGGCATTGAGACAC
AGAAACCCAAACCACTGGCACTTAGCGATATTGAAGCGGACGACGAGCCACGCATCAATATGCACGATGATGAATTGAAT
CGCGTATTGGGTGGCGGACTTGTGCCGGGTTCTCTCGTCCTGATAGGCGGTGAGCCGGGAATCGGTAAATCCACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAAATCCTTTATGTGTCCGGTGAAGAAAGTGCACGACAGCTTAAACTCC
GTGCCGATCGTCTCTCTGATACTTCCAGCGATTGCCTGATTGTTTGTGAGACTTCGCTCGAACAAATTTATGTGCATATC
AAGAATACGAATCCCGATTTAGTGATTATTGACTCTATACAGACTATTTCCACCGAGAGTATCGAATCATCTCCCGGAAG
TATTGCGCAAGTCAGAGAGTGTTCGGCATCTATTCTTCGTTTCGCGAAAGAAACGCATACCCCTGTGTTGCTGATCGGTC
ATATTAATAAAGAAGGAAGTATTGCAGGACCTAAAGTGCTGGAACATATCGTAGATACCGTTCTTCAATTTGAAGGCGAC
CAGCATTATATGTATCGTATTCTGCGCAGCATCAAGAATCGTTTCGGCAGTACGGCAGAGTTAGGGATTTATGAAATGCG
TCAGGATGGGTTGCGCCAAGTGAATAATCCTTCCGAGCTTTTGCTTAGTCAGGACCATGAGGGAATGAGTGGAGTAGCTA
TTGCTTCCGCTATCGAAGGAATCCGCCCGTTCTTGATCGAGACACAGGCTTTGGTCAGTTCTGCTGTTTATGGAAATCCT
CAACGTTCGGCAACCGGTTTCGATTTAAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAGCGTGTCGGATTCAAGTT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGACTGAAGGTGAATGACCCGGCTATCGACTTGCCGGTTATCAGTG
CCATCCTTTCTTCCAATATGGACGCAGCCATTGAGCCGGAAGTTTGCATGGCGGGAGAAATCGGACTGTCGGGAGAGATA
CGTCCTGTAAATCGAATAGAGCAACGTATCGGTGAAGCCGAGAAATTGGGTTTTAAACGGTTCTTGTTGCCAAAATATAA
TTTGCAAGGGATTGACACTAAGAAATTGAAGATCGAGTTAGTTCCGGTGAGAAAGGTAGAAGAAGCATTCAGAGCTCTAT
TCGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(58-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.522

100

0.521
  radA Streptococcus mitis SK321

47.912

100

0.479
  radA Streptococcus pneumoniae Rx1

47.912

100

0.479
  radA Streptococcus pneumoniae D39

47.912

100

0.479
  radA Streptococcus pneumoniae R6

47.912

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.912

100

0.479
  radA Streptococcus mitis NCTC 12261

47.912

100

0.479

Multiple sequence alignment