Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   G3T50_RS06230 Genome accession   NZ_CP048771
Coordinates   1184000..1185802 (-) Length   600 a.a.
NCBI ID   WP_167842864.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179000..1190802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS06205 (G3T50_06180) - 1179125..1180324 (+) 1200 WP_126211904.1 MFS transporter -
  G3T50_RS06210 (G3T50_06185) ciaC 1180380..1180700 (+) 321 WP_002860457.1 invasion antigen CiaC -
  G3T50_RS06215 (G3T50_06190) hemE 1180884..1181906 (+) 1023 WP_167842862.1 uroporphyrinogen decarboxylase -
  G3T50_RS06220 (G3T50_06195) - 1181903..1182805 (+) 903 WP_052797627.1 radical SAM protein -
  G3T50_RS06225 (G3T50_06200) - 1182802..1183998 (-) 1197 WP_167842863.1 hypothetical protein -
  G3T50_RS06230 (G3T50_06205) uvrC 1184000..1185802 (-) 1803 WP_167842864.1 excinuclease ABC subunit UvrC Machinery gene
  G3T50_RS06235 (G3T50_06210) - 1185795..1186289 (-) 495 WP_052781672.1 hypothetical protein -
  G3T50_RS06240 (G3T50_06215) guaA 1186428..1187963 (+) 1536 WP_052781671.1 glutamine-hydrolyzing GMP synthase -
  G3T50_RS06245 (G3T50_06220) - 1188048..1189508 (+) 1461 WP_052781670.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69771.77 Da        Isoelectric Point: 9.4463

>NTDB_id=370698 G3T50_RS06230 WP_167842864.1 1184000..1185802(-) (uvrC) [Campylobacter jejuni strain ZS007]
MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEETAHLEFIATNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
VSCKSPCIFYQISRCLAPCDKRISKEKYLEILDEAMHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIATIKDLEV
RVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPNDIEIFDNS
HLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFDKIPPPDLWLIDGGKALLDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLS
SGVIQKLLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=370698 G3T50_RS06230 WP_167842864.1 1184000..1185802(-) (uvrC) [Campylobacter jejuni strain ZS007]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCTAATAGCACTGGCGTTTATCAATACTTCAATCAAGAAGG
AAAGCTTTTATATGTAGGCAAGGCTAAAAATCTTAAAAATCGTGTTAGATCTTATTTTGCTTTTACTCCAAATTTACATG
CAAATCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGCGCATTTGGAATTTATTGCTACTAATTCAGAG
GCTGATGCTTTGATTTTAGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCACTTTATTTATACTATCCTTTAAAGCAAAAA
GTAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCACCTTGTGATAAACGCATCAGCAAAGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCACTTTTAAATCCTAGCGTTTTGCTTAAAAACTTAGAAAAACAAATGC
TTGTTTTAGCACAGAATGAAAATTACGAAGAAGCAGCTAAAGTAAGGGATCAGATTGCAACGATTAAAGATTTGGAAGTT
AGAGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTGTTTGCTTTAGCTTTTGAAAATTCTATGCTTTCAACCTT
GCGTTTTGTGGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGCATGGATATTCCTTTGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTTTAGAAGAAATTTTAAGTCAAAGGTTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
ATTTTACTATACAAAAAGAATTAAAGTTTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGACAATTCT
CATTTGCAAGGCGTGGCAAATGTTGGAGCTATGGTAACTTATAGAATAAATTCTTGGGATAAGTCAAAATATAGAAAATT
TCATTTAAAACATAAAAATGACTATGATCAAATGCGTGAAGTTTTAACGCGTAGGGCTTTGGACTTTGATAAAATACCCC
CTCCTGATTTATGGCTTATAGATGGGGGAAAGGCTTTGCTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGGGCAAAT
GTCGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGAGCTAAAGGGGGTGCTAAGGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGTCTAAGTATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGATGAAGCACACC
GTTTTGCTATCAGTTTTCATCAAAATACTAAGAAAAAACAGGACTTGAAAAGTTCTAAGCTTGCAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTACAAT
GCTTGTAGGCAGGAAAGCGGCGCAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-537)

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrB/uvrC motif (UVR)

(205-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

47.251

97

0.458

Multiple sequence alignment