Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   AhaeAN54_RS09130 Genome accession   NZ_CP041224
Coordinates   1858509..1858934 (+) Length   141 a.a.
NCBI ID   WP_223804340.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN54     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1853509..1863934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN54_RS09100 (AhaeAN54_009100) - 1854218..1855201 (+) 984 WP_004639309.1 DNA polymerase III subunit delta' -
  AhaeAN54_RS09105 (AhaeAN54_009105) - 1855345..1855653 (+) 309 WP_004639308.1 hypothetical protein -
  AhaeAN54_RS09110 (AhaeAN54_009110) - 1855976..1856320 (+) 345 WP_004639306.1 PilZ domain-containing protein -
  AhaeAN54_RS09115 (AhaeAN54_009115) - 1856341..1857114 (+) 774 WP_005080456.1 TatD family hydrolase -
  AhaeAN54_RS09120 (AhaeAN54_009120) - 1857156..1857761 (+) 606 WP_118902323.1 TetR/AcrR family transcriptional regulator -
  AhaeAN54_RS09125 (AhaeAN54_009125) - 1857776..1858387 (+) 612 WP_005080458.1 type II secretion system protein -
  AhaeAN54_RS09130 (AhaeAN54_009130) xcpV 1858509..1858934 (+) 426 WP_223804340.1 type II secretion system minor pseudopilin GspI Machinery gene
  AhaeAN54_RS09135 (AhaeAN54_009135) xcpW 1858940..1859659 (+) 720 WP_005080462.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AhaeAN54_RS09140 (AhaeAN54_009140) gspK 1859661..1860638 (+) 978 WP_004639300.1 type II secretion system minor pseudopilin GspK -
  AhaeAN54_RS09145 (AhaeAN54_009145) - 1860724..1861320 (+) 597 WP_017394547.1 6-pyruvoyl trahydropterin synthase family protein -
  AhaeAN54_RS09150 (AhaeAN54_009150) ung 1861367..1862080 (+) 714 WP_005090364.1 uracil-DNA glycosylase -
  AhaeAN54_RS09155 (AhaeAN54_009155) - 1862077..1863201 (+) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  AhaeAN54_RS09160 (AhaeAN54_009160) tadA 1863206..1863718 (+) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15678.97 Da        Isoelectric Point: 6.7114

>NTDB_id=370682 AhaeAN54_RS09130 WP_223804340.1 1858509..1858934(+) (xcpV) [Acinetobacter haemolyticus strain AN54]
MEHSSPSCAQEKRCFSNPRSGFTLLEVMVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAMMEINKEWLD
GTQSKQITSQGETWQIDKKAQATISPKVQRIELQVSLFNVDQDKVEAGVGHLVFFNHQTES

Nucleotide


Download         Length: 426 bp        

>NTDB_id=370682 AhaeAN54_RS09130 WP_223804340.1 1858509..1858934(+) (xcpV) [Acinetobacter haemolyticus strain AN54]
ATCGAGCATAGCTCTCCGTCTTGCGCTCAGGAGAAACGATGTTTCTCTAATCCTCGCTCAGGATTTACCTTACTTGAAGT
GATGGTGGCTTTGGCAATTTTTGCAGTGGCTGCAATCGCGCTAACAAAAATAGCCATGCAATATACGCAAGCAACCTCAA
ATGCAATTTTACGTACTAAGGCTCAATTTGTTGCAATGAATGAGGTTGCAATGATGGAGATTAACAAAGAGTGGTTGGAT
GGAACCCAATCCAAACAAATCACTTCACAAGGTGAAACATGGCAAATTGATAAAAAAGCACAAGCAACGATTAGCCCCAA
AGTTCAGCGGATCGAATTACAAGTGAGTTTATTTAACGTTGATCAAGACAAAGTTGAAGCGGGTGTTGGTCATCTAGTGT
TTTTCAATCATCAGACTGAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(58-116)

Prokaryotic N-terminal methylation motif (N_methyl)

(18-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

81.197

82.979

0.674

Multiple sequence alignment