Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BMD_RS25555 | Genome accession | NC_014103 |
| Coordinates | 5082263..5082763 (-) | Length | 166 a.a. |
| NCBI ID | WP_013059914.1 | Uniprot ID | A0A0B6A5N1 |
| Organism | Priestia megaterium DSM 319 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5077263..5087763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMD_RS25535 (BMD_5252) | rplI | 5078418..5078867 (-) | 450 | WP_013085555.1 | 50S ribosomal protein L9 | - |
| BMD_RS25540 (BMD_5253) | - | 5078864..5080837 (-) | 1974 | WP_013085556.1 | DHH family phosphoesterase | - |
| BMD_RS25545 (BMD_5254) | - | 5080874..5081818 (-) | 945 | WP_013085557.1 | YybS family protein | - |
| BMD_RS25550 (BMD_5255) | rpsR | 5081957..5082196 (-) | 240 | WP_013059913.1 | 30S ribosomal protein S18 | - |
| BMD_RS25555 (BMD_5256) | ssbA | 5082263..5082763 (-) | 501 | WP_013059914.1 | single-stranded DNA-binding protein | Machinery gene |
| BMD_RS25560 (BMD_5257) | rpsF | 5082812..5083099 (-) | 288 | WP_013059915.1 | 30S ribosomal protein S6 | - |
| BMD_RS25565 (BMD_5258) | ychF | 5083289..5084389 (-) | 1101 | WP_013085558.1 | redox-regulated ATPase YchF | - |
| BMD_RS25570 (BMD_5259) | - | 5084558..5084755 (-) | 198 | WP_013059917.1 | DUF951 domain-containing protein | - |
| BMD_RS25575 (BMD_5260) | - | 5084770..5085663 (-) | 894 | WP_013085559.1 | mechanosensitive ion channel family protein | - |
| BMD_RS25580 (BMD_5261) | - | 5085731..5086744 (-) | 1014 | WP_013085560.1 | membrane protein | - |
| BMD_RS25585 (BMD_5262) | yyaC | 5086831..5087451 (+) | 621 | WP_013085561.1 | spore protease YyaC | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18132.76 Da Isoelectric Point: 4.6529
>NTDB_id=37068 BMD_RS25555 WP_013059914.1 5082263..5082763(-) (ssbA) [Priestia megaterium DSM 319]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=37068 BMD_RS25555 WP_013059914.1 5082263..5082763(-) (ssbA) [Priestia megaterium DSM 319]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAACTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAGTTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAACTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAGTTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
72.571 |
100 |
0.765 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.721 |
100 |
0.608 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.208 |
63.855 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
33.889 |
100 |
0.367 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.367 |