Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   G3T50_RS03360 Genome accession   NZ_CP048771
Coordinates   620611..620994 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain ZS007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 615611..625994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS03340 (G3T50_03305) - 615690..617624 (-) 1935 WP_167842726.1 ribonuclease R family protein -
  G3T50_RS03345 (G3T50_03310) ilvC 617743..618765 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  G3T50_RS03350 (G3T50_03315) - 618769..619851 (+) 1083 WP_126207842.1 divergent polysaccharide deacetylase family protein -
  G3T50_RS03355 (G3T50_03320) dprA 619841..620614 (+) 774 WP_167842727.1 DNA-processing protein DprA Machinery gene
  G3T50_RS03360 (G3T50_03325) dprB 620611..620994 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  G3T50_RS03365 (G3T50_03330) - 621023..621862 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3T50_RS03370 (G3T50_03335) msrA 622038..622535 (-) 498 WP_070316425.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T50_RS03375 (G3T50_03340) ppa 622577..623095 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3T50_RS03380 (G3T50_03345) adk 623105..623683 (-) 579 WP_052794065.1 adenylate kinase -
  G3T50_RS03385 (G3T50_03350) aspS 623680..625431 (-) 1752 WP_167842728.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=370679 G3T50_RS03360 WP_002852281.1 620611..620994(+) (dprB) [Campylobacter jejuni strain ZS007]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=370679 G3T50_RS03360 WP_002852281.1 620611..620994(+) (dprB) [Campylobacter jejuni strain ZS007]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGCGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449