Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   G3R55_RS07920 Genome accession   NZ_CP048769
Coordinates   1540160..1542058 (+) Length   632 a.a.
NCBI ID   WP_052782075.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1535160..1547058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS07890 (G3R55_07890) - 1535825..1536097 (+) 273 WP_052782074.1 NifU family protein -
  G3R55_RS07895 (G3R55_07895) - 1536084..1536635 (+) 552 WP_002851410.1 hypothetical protein -
  G3R55_RS07900 (G3R55_07900) murE 1536619..1537902 (+) 1284 WP_002867548.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  G3R55_RS07905 (G3R55_07905) - 1537906..1538217 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  G3R55_RS07910 (G3R55_07910) - 1538214..1539308 (+) 1095 WP_002874465.1 PDZ domain-containing protein -
  G3R55_RS07915 (G3R55_07915) ispA 1539305..1540150 (+) 846 WP_002826398.1 polyprenyl synthetase family protein -
  G3R55_RS07920 (G3R55_07920) recP/tkt 1540160..1542058 (+) 1899 WP_052782075.1 transketolase Machinery gene
  G3R55_RS07925 (G3R55_07925) iamB 1542060..1543169 (+) 1110 WP_057095831.1 ABC transporter permease -
  G3R55_RS07930 (G3R55_07930) iamA 1543170..1543892 (+) 723 WP_052821967.1 ATP-binding cassette domain-containing protein -
  G3R55_RS07935 (G3R55_07935) - 1543895..1544785 (+) 891 WP_002860094.1 MlaD family protein -
  G3R55_RS07940 (G3R55_07940) - 1544785..1545384 (+) 600 WP_052782077.1 ABC-type transport auxiliary lipoprotein family protein -
  G3R55_RS07945 (G3R55_07945) - 1545440..1545940 (+) 501 WP_002877873.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69623.53 Da        Isoelectric Point: 6.4271

>NTDB_id=370664 G3R55_RS07920 WP_052782075.1 1540160..1542058(+) (recP/tkt) [Campylobacter jejuni strain ZJB020]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLYSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKKQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPIFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFECFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=370664 G3R55_RS07920 WP_052782075.1 1540160..1542058(+) (recP/tkt) [Campylobacter jejuni strain ZJB020]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCTGATATGGTACAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCAA
CTTGGCTAAACCGTGATAGACTTGTATTTTCAGGTGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGTGGC
TATGACTTAAGCTTAGAAGATCTTAAAAATTTCCGCCAACTTTATTCTAAAACCCCTGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTCATTTATGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGCGAAGAAGTGATTAAAAA
AGCCAAAAAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGTAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGTTA
TTAAATCCTGATTTTAACAAAATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCGGACTTAGGTCCTTCGAATAAAACAGAACTTC
ACAGTATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTGTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTATTTTTGGAGATGTAAAAAACGGAGCGTATTTACTCAAAGAAAGCAAAGAGGCTAAATTTACACTTCTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTCTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCCATAAAGTATATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGACAAAGATG
TGTTTGAATGCTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, C-terminal domain (Transketolase_C)

(521-571)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.895

100

0.419

Multiple sequence alignment