Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   G3R55_RS05910 Genome accession   NZ_CP048769
Coordinates   1135342..1137144 (-) Length   600 a.a.
NCBI ID   WP_052781673.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130342..1142144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS05885 (G3R55_05885) - 1130467..1131666 (+) 1200 WP_167861752.1 MFS transporter -
  G3R55_RS05890 (G3R55_05890) ciaC 1131722..1132042 (+) 321 WP_087695929.1 invasion antigen CiaC -
  G3R55_RS05895 (G3R55_05895) hemE 1132226..1133248 (+) 1023 WP_087695930.1 uroporphyrinogen decarboxylase -
  G3R55_RS05900 (G3R55_05900) - 1133245..1134147 (+) 903 WP_087695931.1 radical SAM protein -
  G3R55_RS05905 (G3R55_05905) - 1134144..1135340 (-) 1197 WP_167861753.1 hypothetical protein -
  G3R55_RS05910 (G3R55_05910) uvrC 1135342..1137144 (-) 1803 WP_052781673.1 excinuclease ABC subunit UvrC Machinery gene
  G3R55_RS05915 (G3R55_05915) - 1137137..1137631 (-) 495 WP_002859309.1 hypothetical protein -
  G3R55_RS05920 (G3R55_05920) guaA 1137770..1139305 (+) 1536 WP_052781671.1 glutamine-hydrolyzing GMP synthase -
  G3R55_RS05925 (G3R55_05925) - 1139391..1140851 (+) 1461 WP_167861754.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69726.79 Da        Isoelectric Point: 9.4463

>NTDB_id=370652 G3R55_RS05910 WP_052781673.1 1135342..1137144(-) (uvrC) [Campylobacter jejuni strain ZJB020]
MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEETAHLEFIATNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
VSCKSPCIFYQISRCLAPCDKRISKEKYLEILDEAMHALLNPSVLLKNLEKQMLVLAQNENYEEAAKVRDQIATIKDLEV
RVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISANSKIVPIKNDIQWDKNEIYKQLILENFSMDIPLLASVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPNDIEIFDNS
HLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFDKMPPPDLWLIDGGKVLLDLAKEIILSTGAN
VDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLS
SGVIQKLLAYYGNFESIYKADFKDLAMLVGRKAAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=370652 G3R55_RS05910 WP_052781673.1 1135342..1137144(-) (uvrC) [Campylobacter jejuni strain ZJB020]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCTAATAGCACTGGCGTTTATCAATACTTCAATCAAGAAGG
AAAGCTTTTATATGTAGGCAAGGCTAAAAATCTTAAAAATCGTGTTAGATCTTATTTTGCTTTTACTCCAAATTTACATG
CAAATCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGCGCATTTGGAATTTATTGCTACTAATTCAGAG
GCTGATGCTTTGATTTTAGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTACTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCACTTTATTTATACTATCCTTTAAAGCAAAAA
GTAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCACCTTGTGATAAACGCATCAGCAAAGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCACTTTTAAATCCTAGCGTTTTGCTTAAAAACTTAGAAAAACAAATGC
TTGTTTTAGCACAGAATGAAAATTACGAAGAAGCAGCTAAAGTAAGGGATCAGATTGCAACGATTAAAGATTTGGAAGTT
AGAGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTGTTTGCTTTAGCTTTTGAAAATTCTATGCTTTCAACCTT
GCGTTTTGTGGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAGATTGTTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTATAAGCAACTGATTTTAGAAAATTTTAGTATGGACATTCCTTTACTTGCAAGTGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTTTAGAAGAAATTTTAAGCCAAAGGTTTGATAAAAAAATCAGTATTAAAATCCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAATGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
ATTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGATAATTCT
CATTTGCAAGGTGTGGCAAATGTTGGAGCTATGGTAACTTATAGAATAAATTCTTGGGATAAGTCAAAATATCGAAAATT
TCATTTAAAACATAAAAATGACTATGATCAAATGCGTGAAGTTTTAACGCGTAGGGCTTTGGATTTTGATAAAATGCCAC
CTCCTGATTTATGGCTTATAGATGGAGGCAAGGTTTTGCTTGATTTGGCTAAAGAAATTATTTTAAGCACTGGGGCAAAT
GTTGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGAGCTAAAGGGGGTGCTAAGGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGTCTAAGTATTAACGATAAAAAACTACAATTCTTGCAGAAATTAAGAGATGAAGCACACC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAAAAGTTCTAAGCTTGCAAATTTAGGACTTAGT
TCTGGAGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTGCAAT
GCTTGTAGGCAGGAAAGCGGCGCAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-237)

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

46.907

97

0.455