Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3R55_RS05660 Genome accession   NZ_CP048769
Coordinates   1088496..1088990 (+) Length   164 a.a.
NCBI ID   WP_032583788.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083496..1093990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS05645 (G3R55_05645) - 1084882..1086060 (-) 1179 WP_052784222.1 metal-dependent hydrolase -
  G3R55_RS05650 (G3R55_05650) gpsA 1086070..1086966 (-) 897 WP_079460087.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  G3R55_RS05655 (G3R55_05655) gatB 1086963..1088381 (-) 1419 WP_167861743.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  G3R55_RS05660 (G3R55_05660) luxS 1088496..1088990 (+) 495 WP_032583788.1 S-ribosylhomocysteine lyase Regulator
  G3R55_RS05665 (G3R55_05665) - 1089301..1090293 (+) 993 WP_002868574.1 isopenicillin N synthase family oxygenase -
  G3R55_RS05670 (G3R55_05670) - 1090304..1091074 (+) 771 WP_052793737.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  G3R55_RS05675 (G3R55_05675) metE 1091086..1093350 (+) 2265 WP_052793736.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.21 Da        Isoelectric Point: 6.6314

>NTDB_id=370646 G3R55_RS05660 WP_032583788.1 1088496..1088990(+) (luxS) [Campylobacter jejuni strain ZJB020]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=370646 G3R55_RS05660 WP_032583788.1 1088496..1088990(+) (luxS) [Campylobacter jejuni strain ZJB020]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707